Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   P8934_RS00405 Genome accession   NZ_CP121193
Coordinates   82900..84402 (+) Length   500 a.a.
NCBI ID   WP_278032420.1    Uniprot ID   -
Organism   Halomonas sp. CKK8     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 77900..89402
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P8934_RS00375 (P8934_00375) - 78104..79030 (-) 927 WP_106231082.1 LysR family transcriptional regulator -
  P8934_RS00380 (P8934_00380) - 79188..79964 (+) 777 WP_278032419.1 ferredoxin--NADP reductase -
  P8934_RS00385 (P8934_00385) glnK 80071..80409 (-) 339 WP_106231080.1 P-II family nitrogen regulator -
  P8934_RS00390 (P8934_00390) - 80563..81813 (-) 1251 WP_133636725.1 ammonium transporter -
  P8934_RS00395 (P8934_00395) - 81854..82192 (-) 339 WP_106231078.1 P-II family nitrogen regulator -
  P8934_RS00400 (P8934_00400) - 82484..82825 (+) 342 WP_133636727.1 accessory factor UbiK family protein -
  P8934_RS00405 (P8934_00405) comM 82900..84402 (+) 1503 WP_278032420.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  P8934_RS00410 (P8934_00410) - 84415..84897 (-) 483 WP_278032421.1 hypothetical protein -
  P8934_RS00415 (P8934_00415) - 84894..85868 (-) 975 WP_278032422.1 alpha/beta hydrolase -
  P8934_RS00420 (P8934_00420) - 86101..88275 (+) 2175 WP_278032423.1 malate synthase G -
  P8934_RS00425 (P8934_00425) - 88465..88878 (+) 414 WP_040183775.1 PaaI family thioesterase -
  P8934_RS00430 (P8934_00430) - 88854..89258 (-) 405 WP_278032424.1 DUF423 domain-containing protein -

Sequence

Protein


Download         Length: 500 a.a.        Molecular weight: 53140.20 Da        Isoelectric Point: 7.8408

>NTDB_id=810889 P8934_RS00405 WP_278032420.1 82900..84402(+) (comM) [Halomonas sp. CKK8]
MTLAIIHTRAGLGLEAPEVLVEVHLANGLPGMTLVGLPEAAVKESRERVRSALVNAGFDFPLRRITLNLAPADLPKEGGR
FDLPIALGLLVASGQVPAEALAGVECAGELALDGRLRPVSGVLPLAMATHRAGRRLIVPRANADEAALAGDLEVLPADHL
LEVVAHLLGQSPISPHRAPTAVLAPEAGPDLAEVRGQHQARRALEVAAAGGHNLLFAGPPGTGKTMLASRLPGILPPLSE
EEALEVAAIRSVSGLSHAEQWGVRPFRAPHHTASAVALVGGGSRPRPGEISLAHRGVLFLDELPEFSRHVLEVMREPMES
GQIHIARASHERRYPAGFQLVAAMNPCPCGHLGDPRQACHCTAAQIQRYQARLSGPLLDRIDLQVEVPALAPEQLTSREP
GESSAVVRERVLAARARQSSRGALNARLSGRALEEACALQAADRAWLASVLERLKLSARAYHRVLRVALTLADLAGESRP
GRDQLIEAIGYRQLDRLLKG

Nucleotide


Download         Length: 1503 bp        

>NTDB_id=810889 P8934_RS00405 WP_278032420.1 82900..84402(+) (comM) [Halomonas sp. CKK8]
ATGACGCTGGCAATCATCCACACCCGGGCCGGCCTCGGCCTCGAGGCGCCCGAGGTGCTTGTCGAGGTGCACCTGGCCAA
TGGACTGCCCGGCATGACCCTGGTGGGCCTGCCGGAGGCCGCCGTCAAGGAGAGCCGCGAGCGGGTGCGCAGTGCCCTGG
TGAACGCCGGCTTCGACTTCCCGTTGCGGCGCATCACTCTCAACCTGGCGCCCGCCGACCTGCCCAAGGAGGGGGGCCGC
TTCGACCTGCCCATCGCCCTGGGCCTGCTGGTGGCCTCCGGCCAGGTGCCGGCCGAGGCCCTGGCGGGCGTCGAGTGCGC
GGGCGAGCTGGCCCTGGATGGCCGCCTGCGCCCGGTGTCCGGCGTCCTGCCGCTGGCCATGGCGACACACCGCGCTGGCC
GGCGCCTGATCGTGCCGCGGGCCAACGCCGACGAGGCGGCCCTGGCCGGCGACCTCGAGGTACTGCCGGCGGATCACCTG
CTGGAGGTGGTGGCCCACCTGCTGGGCCAGTCGCCCATCTCGCCCCACCGCGCCCCGACTGCCGTGCTGGCCCCCGAGGC
GGGCCCTGACCTGGCGGAGGTGCGTGGCCAGCACCAGGCCCGTCGCGCCCTGGAAGTGGCCGCCGCCGGCGGGCATAACC
TGCTGTTCGCCGGCCCGCCCGGGACCGGCAAGACCATGCTGGCCAGCCGCCTTCCGGGGATCCTGCCGCCGCTCTCCGAG
GAGGAGGCCCTCGAGGTGGCGGCCATCCGCTCGGTCAGCGGGCTGTCGCATGCCGAGCAGTGGGGCGTGCGTCCCTTCCG
TGCCCCGCACCATACCGCCAGTGCCGTGGCCCTGGTGGGCGGCGGCTCCCGGCCGCGGCCCGGCGAGATCTCCCTGGCCC
ACCGCGGGGTGCTGTTCCTCGACGAGCTGCCGGAGTTCTCGCGACACGTGCTGGAGGTGATGCGCGAGCCCATGGAGTCG
GGGCAGATCCATATCGCCCGGGCCAGCCACGAGCGGCGCTACCCGGCGGGGTTCCAGCTGGTGGCGGCCATGAACCCCTG
TCCCTGCGGGCATCTGGGCGACCCGCGCCAGGCCTGCCATTGCACGGCGGCCCAGATCCAGCGCTACCAGGCGCGCCTCT
CGGGACCGTTGCTCGACCGCATCGACCTGCAGGTGGAGGTGCCGGCGCTGGCGCCGGAGCAACTCACTTCCCGTGAACCG
GGGGAGTCCTCGGCGGTGGTGCGCGAGCGGGTGCTGGCGGCTCGGGCTCGCCAGTCGTCCCGCGGTGCGCTGAACGCGCG
GCTGTCCGGGCGGGCCCTGGAGGAGGCTTGCGCCCTGCAGGCGGCCGATCGTGCCTGGCTGGCCAGCGTGCTGGAGCGTC
TCAAGCTCTCGGCCCGGGCCTACCACCGGGTCCTGCGGGTGGCCCTGACCCTCGCCGACCTGGCCGGTGAATCGCGTCCC
GGGCGTGACCAGCTGATCGAGGCGATCGGCTACCGACAGCTCGATCGCCTGCTCAAGGGCTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-394)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-492)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

55.777

100

0.56
  comM Vibrio campbellii strain DS40M4

55.578

100

0.558
  comM Glaesserella parasuis strain SC1401

53.045

100

0.54
  comM Haemophilus influenzae Rd KW20

52.569

100

0.532
  comM Legionella pneumophila str. Paris

49.899

99.4

0.496
  comM Legionella pneumophila strain ERS1305867

49.899

99.4

0.496
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

47.255

100

0.482