Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYD   Type   Machinery gene
Locus tag   P8R98_RS11555 Genome accession   NZ_CP121159
Coordinates   2321951..2322364 (-) Length   137 a.a.
NCBI ID   WP_000244259.1    Uniprot ID   -
Organism   Streptococcus agalactiae strain S1     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2316951..2327364
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P8R98_RS11525 - 2317113..2318643 (+) 1531 Protein_2200 IS1182-like element IS1563 family transposase -
  P8R98_RS11530 - 2318602..2319795 (-) 1194 WP_000047534.1 acetate kinase -
  P8R98_RS11535 comYH 2319827..2320801 (-) 975 WP_001008569.1 class I SAM-dependent methyltransferase Machinery gene
  P8R98_RS11540 comGG 2320916..2321287 (-) 372 WP_000601101.1 competence type IV pilus minor pilin ComGG -
  P8R98_RS11545 comGF 2321265..2321726 (-) 462 WP_001874060.1 competence type IV pilus minor pilin ComGF -
  P8R98_RS11550 comGE 2321680..2321979 (-) 300 WP_001872488.1 competence type IV pilus minor pilin ComGE -
  P8R98_RS11555 comYD 2321951..2322364 (-) 414 WP_000244259.1 competence type IV pilus minor pilin ComGD Machinery gene
  P8R98_RS11560 comGC/cglC 2322339..2322668 (-) 330 WP_000793380.1 competence type IV pilus major pilin ComGC Machinery gene
  P8R98_RS11565 comYB 2322665..2323708 (-) 1044 WP_223297804.1 competence type IV pilus assembly protein ComGB Machinery gene
  P8R98_RS11570 comYA 2323602..2324573 (-) 972 WP_000250798.1 competence type IV pilus ATPase ComGA Machinery gene
  P8R98_RS11575 - 2324619..2326080 (-) 1462 Protein_2210 IS1182-like element IS1563 family transposase -
  P8R98_RS11580 - 2326310..2326675 (-) 366 WP_000285374.1 DUF1033 family protein -

Sequence

Protein


Download         Length: 137 a.a.        Molecular weight: 15938.41 Da        Isoelectric Point: 9.9787

>NTDB_id=810638 P8R98_RS11555 WP_000244259.1 2321951..2322364(-) (comYD) [Streptococcus agalactiae strain S1]
MVLRKFQVKAFTVLESLIVLSVVAFMTLVFSTSFNNIFRQVEETIFFISFEHLYRDTQKLSAFGQKKQTLTISHNYLENT
YERLYLPKTVKVVKSDTLAFDANGGNSSLAKIQFECYRKTVTYQLYIGSGNYRKKEN

Nucleotide


Download         Length: 414 bp        

>NTDB_id=810638 P8R98_RS11555 WP_000244259.1 2321951..2322364(-) (comYD) [Streptococcus agalactiae strain S1]
ATGGTTCTCAGAAAATTTCAAGTTAAAGCATTTACTGTTTTGGAGAGCCTTATTGTATTATCAGTAGTGGCATTTATGAC
GTTAGTATTTTCAACATCATTTAATAATATTTTTAGGCAGGTTGAAGAAACAATTTTCTTCATATCCTTTGAACATCTTT
ATAGAGATACTCAGAAATTGAGTGCATTTGGTCAGAAGAAACAAACCCTTACAATCTCTCATAATTATCTCGAAAATACT
TATGAGAGACTTTATTTACCTAAAACTGTAAAAGTAGTCAAAAGTGACACACTTGCATTTGACGCTAATGGAGGGAATTC
AAGCTTGGCAAAAATTCAATTTGAATGTTATAGAAAAACTGTCACGTATCAATTATATATAGGAAGTGGTAATTATCGTA
AGAAAGAAAATTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYD Streptococcus mutans UA140

51.515

96.35

0.496
  comYD Streptococcus mutans UA159

51.515

96.35

0.496
  comYD Streptococcus gordonii str. Challis substr. CH1

47.407

98.54

0.467
  comGD/cglD Streptococcus mitis NCTC 12261

41.045

97.81

0.401
  comGD/cglD Streptococcus pneumoniae TIGR4

43.307

92.701

0.401
  comGD/cglD Streptococcus mitis SK321

43.307

92.701

0.401
  comGD/cglD Streptococcus pneumoniae Rx1

42.52

92.701

0.394
  comGD/cglD Streptococcus pneumoniae D39

42.52

92.701

0.394
  comGD/cglD Streptococcus pneumoniae R6

42.52

92.701

0.394