Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   P6287_RS18615 Genome accession   NZ_CP121108
Coordinates   3994321..3995841 (+) Length   506 a.a.
NCBI ID   WP_110867717.1    Uniprot ID   -
Organism   Pantoea sp. X85     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 3989321..4000841
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P6287_RS18595 (P6287_18595) - 3990896..3991825 (-) 930 WP_007888821.1 branched-chain amino acid transaminase -
  P6287_RS18600 (P6287_18600) ilvM 3991844..3992101 (-) 258 WP_101762784.1 acetolactate synthase 2 small subunit -
  P6287_RS18605 (P6287_18605) ilvG 3992098..3993744 (-) 1647 WP_008106622.1 acetolactate synthase 2 catalytic subunit -
  P6287_RS18610 (P6287_18610) ilvL 3993894..3993992 (-) 99 WP_071531048.1 ilv operon leader peptide -
  P6287_RS18615 (P6287_18615) comM 3994321..3995841 (+) 1521 WP_110867717.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  P6287_RS18620 (P6287_18620) - 3995872..3996210 (-) 339 WP_008106616.1 DUF413 domain-containing protein -
  P6287_RS18625 (P6287_18625) hdfR 3996332..3997153 (+) 822 WP_008106614.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 55137.35 Da        Isoelectric Point: 7.8969

>NTDB_id=810168 P6287_RS18615 WP_110867717.1 3994321..3995841(+) (comM) [Pantoea sp. X85]
MSLSKVLTRAALGVQAPLVTVEVHISNGLPALTLVGLPETTVKEARERVRSAIINSGFTFPAKRVTINLAPADLPKEGGR
YDLPIAIAILAASEQLPDAKLGQFEFLGELALNGALCGVQAAIPAAMAALQAGRQMVLAEQNQQDVGLIQQGETLVGKHL
VEICAFLHNKTTLTVAHYQPETLEQEKQDLSDIIGQDQGRRALEITAAGGHNLLLIGPPGTGKTMLATRLPGIMPPLDDQ
EALECAAIASLVSSGNLHHQWRKRPFRAPHHSSSLYALVGGGSLPRPGEISLAHNGVLFLDELPEFERRTLDALREPIES
GEIAISRTRAKVTYPARFQLIGAMNPSPTGHYQGNHNRSSPQQVLRYLNRLSGPFLDRFDLSLEVPLLPSGSLSKKQQVS
ESSAEVLTRVLAARKIQTARSGKVNAHLSNPEILRWCPLKQQDAEWLEEVLNSLGLSVRAWQRILKVARTIADLAGEEQI
TRSHLQEAVGYRSIDRLMIYLHKTLE

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=810168 P6287_RS18615 WP_110867717.1 3994321..3995841(+) (comM) [Pantoea sp. X85]
ATGTCTTTATCGAAGGTATTAACACGAGCTGCGCTGGGTGTTCAGGCTCCGCTGGTGACGGTGGAAGTGCACATCAGCAA
CGGCTTGCCGGCCCTGACGCTGGTTGGACTGCCTGAAACCACGGTAAAAGAAGCGCGGGAACGGGTGCGAAGCGCGATTA
TCAATAGCGGGTTCACCTTCCCGGCGAAACGCGTCACCATCAATCTGGCGCCTGCCGATCTGCCAAAAGAGGGCGGACGC
TATGACCTCCCCATCGCTATCGCCATTCTGGCGGCCTCTGAGCAGCTGCCAGACGCAAAACTGGGGCAATTTGAATTCCT
GGGGGAGTTAGCACTTAACGGCGCGCTCTGTGGCGTTCAGGCCGCTATTCCAGCTGCGATGGCGGCACTGCAAGCAGGCA
GACAAATGGTGTTAGCTGAACAGAATCAACAGGATGTAGGGTTGATTCAACAAGGCGAGACGCTGGTTGGTAAACATCTG
GTAGAAATCTGTGCGTTTCTCCATAACAAAACCACTCTCACTGTCGCGCATTATCAGCCCGAAACGCTTGAACAGGAAAA
GCAGGACCTCAGCGATATCATTGGCCAGGATCAGGGCCGACGTGCACTGGAGATCACCGCAGCTGGCGGGCATAACCTGT
TACTGATTGGGCCGCCTGGCACCGGCAAGACCATGTTGGCGACGCGTCTGCCCGGTATCATGCCACCGTTAGACGACCAG
GAAGCGCTGGAGTGCGCCGCTATCGCCAGTCTGGTAAGCAGTGGCAATCTCCATCATCAGTGGCGCAAACGGCCATTCAG
AGCGCCTCATCACAGTTCATCACTCTATGCGCTGGTTGGGGGCGGATCCTTGCCGCGGCCGGGAGAAATCTCCCTGGCAC
ACAATGGCGTGTTATTCCTCGATGAGCTGCCAGAGTTCGAGCGCAGAACACTTGATGCTTTGCGCGAACCGATTGAATCC
GGGGAAATCGCCATTTCACGCACGCGCGCTAAAGTGACGTATCCCGCGCGCTTTCAATTGATCGGCGCGATGAATCCCAG
CCCGACCGGGCATTATCAGGGCAACCATAATCGCTCATCACCTCAGCAAGTGTTGCGCTATCTCAATCGGTTATCAGGAC
CTTTTCTCGATCGCTTTGATTTATCGTTAGAGGTCCCACTTCTGCCCAGTGGATCGCTAAGTAAGAAACAACAAGTCAGC
GAAAGCAGCGCTGAAGTTTTAACTCGCGTCCTCGCCGCACGAAAGATTCAAACAGCACGCAGCGGAAAAGTGAATGCTCA
TCTCTCTAACCCAGAGATTTTACGCTGGTGTCCATTGAAGCAACAGGATGCTGAATGGCTGGAAGAAGTGTTGAATTCGT
TGGGGCTTTCAGTACGCGCCTGGCAGCGGATTTTAAAGGTGGCCAGGACAATAGCTGATTTAGCAGGTGAAGAGCAGATT
ACTCGTAGTCATTTGCAGGAAGCGGTGGGATATCGCAGCATCGACCGCTTAATGATCTATCTGCACAAGACTCTGGAATA
A

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-492)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-389)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

60.277

100

0.603
  comM Vibrio cholerae strain A1552

60.558

99.209

0.601
  comM Glaesserella parasuis strain SC1401

60.04

99.407

0.597
  comM Vibrio campbellii strain DS40M4

59.761

99.209

0.593
  comM Legionella pneumophila str. Paris

46.68

98.221

0.458
  comM Legionella pneumophila strain ERS1305867

46.68

98.221

0.458
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.249

100

0.437