Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   RO838_RS03275 Genome accession   NZ_CP135134
Coordinates   760419..761810 (-) Length   463 a.a.
NCBI ID   WP_057683400.1    Uniprot ID   -
Organism   Xylella fastidiosa strain CFBP8478     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 755419..766810
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RO838_RS03250 (RO838_03250) truA 756101..756871 (+) 771 WP_057683398.1 tRNA pseudouridine(38-40) synthase TruA -
  RO838_RS03255 (RO838_03255) - 756868..757530 (+) 663 WP_004090663.1 phosphoribosylanthranilate isomerase -
  RO838_RS03260 (RO838_03260) trpB 758032..759249 (+) 1218 WP_057683411.1 tryptophan synthase subunit beta -
  RO838_RS03265 (RO838_03265) trpA 759375..760181 (+) 807 WP_057683399.1 tryptophan synthase subunit alpha -
  RO838_RS03270 (RO838_03270) - 760284..760406 (+) 123 WP_316666890.1 hypothetical protein -
  RO838_RS03275 (RO838_03275) radA/sms 760419..761810 (-) 1392 WP_057683400.1 DNA repair protein RadA Machinery gene
  RO838_RS03280 (RO838_03280) - 761980..762945 (+) 966 WP_004090672.1 LLM class flavin-dependent oxidoreductase -
  RO838_RS03285 (RO838_03285) - 763146..763625 (-) 480 WP_057683401.1 hypothetical protein -
  RO838_RS03290 (RO838_03290) recQ 763748..765550 (-) 1803 WP_057683402.1 DNA helicase RecQ Machinery gene
  RO838_RS03295 (RO838_03295) - 765730..766272 (-) 543 WP_057683403.1 Dps family protein -

Sequence

Protein


Download         Length: 463 a.a.        Molecular weight: 49481.84 Da        Isoelectric Point: 7.9423

>NTDB_id=810168 RO838_RS03275 WP_057683400.1 760419..761810(-) (radA/sms) [Xylella fastidiosa strain CFBP8478]
MTKNAASKARIAYVCTECGTEYSKWQGQCTECGIWNCLSQITLGHAGSVKNPTMKHGNWTGQLDPPKITALKDVQHSEQA
RISTGIGEFDRVLGGGLVAGAVVLIGGDPGIGKSTLLLQALARMASNLPTLYVTGEESLAQVAGRAVRLDLPLEGLNALA
ETGIESILQHASSARPRLIVADSVQTLWTETLTAAPGSVSQVRESAAQLVRYAKETGTTVFLVGHVTKEGGIAGPRVLEH
MVDAVLYFEGESGSRFRLLRAFKNRFGAVNELGVFAMSEKGLKEVANPSAIFLSGRNSDQPGSCVMVTREGTRPLMVEVQ
ALVDTSPLSNPRRVTVGLEQNRLAMLLAVLHRHGNVLVGDQDVFINIVGGIRVQETAADLPVLLAVRSSLCNRVLPEKTI
AFGEVGLSGEIRPVPNGEERLREAATHGFKRAIVPKANAPKSAIKDMQIIAVERLDQALEASY

Nucleotide


Download         Length: 1392 bp        

>NTDB_id=810168 RO838_RS03275 WP_057683400.1 760419..761810(-) (radA/sms) [Xylella fastidiosa strain CFBP8478]
ATGACCAAAAACGCCGCAAGCAAAGCCAGGATTGCCTATGTCTGCACTGAATGCGGCACCGAATACAGCAAATGGCAGGG
ACAGTGCACCGAATGCGGCATCTGGAATTGCTTAAGCCAAATCACCCTCGGACATGCAGGATCGGTCAAAAACCCAACCA
TGAAGCACGGCAATTGGACCGGTCAGCTCGACCCACCCAAGATCACCGCATTGAAGGACGTGCAACACAGCGAACAAGCA
CGCATCTCCACCGGCATTGGCGAGTTTGACCGCGTCCTAGGAGGCGGCCTGGTGGCAGGCGCGGTAGTCCTGATTGGTGG
CGATCCAGGCATCGGCAAATCCACATTGCTACTGCAAGCACTAGCACGGATGGCAAGCAACCTACCCACACTGTATGTGA
CGGGTGAAGAATCGCTGGCACAGGTCGCCGGGCGTGCGGTGCGCCTGGATCTGCCCCTGGAGGGCTTAAACGCACTCGCA
GAAACCGGTATTGAATCAATCCTGCAACACGCCAGCAGCGCACGGCCACGACTGATTGTCGCCGACTCAGTACAGACCCT
ATGGACCGAAACACTGACCGCAGCACCCGGTTCAGTCAGCCAAGTACGAGAAAGCGCCGCACAGCTAGTGCGCTACGCCA
AAGAAACCGGCACAACCGTGTTCCTGGTTGGCCATGTCACCAAAGAAGGCGGCATCGCCGGCCCACGCGTACTGGAGCAC
ATGGTAGATGCCGTGCTGTATTTTGAAGGCGAAAGCGGTAGCCGTTTCCGTCTCCTGCGGGCATTCAAAAACCGCTTTGG
AGCAGTCAACGAACTAGGCGTCTTTGCGATGAGCGAAAAAGGCTTGAAAGAGGTCGCCAATCCATCAGCCATTTTTTTAT
CCGGCAGAAACAGCGACCAACCAGGCAGCTGTGTGATGGTCACCCGTGAAGGCACACGCCCCCTAATGGTCGAAGTACAA
GCACTCGTCGATACCTCGCCACTGTCCAACCCACGCAGGGTTACCGTCGGGCTGGAACAAAATCGGCTAGCAATGCTGTT
AGCCGTGTTGCATCGTCACGGTAACGTCCTGGTTGGTGACCAAGACGTATTCATCAACATCGTTGGCGGCATCCGCGTTC
AAGAGACAGCCGCAGATCTACCTGTACTACTGGCGGTCCGGTCCTCGTTATGCAACCGGGTGCTACCAGAAAAGACCATC
GCCTTTGGCGAAGTGGGTTTATCCGGTGAAATCCGCCCGGTCCCCAACGGCGAAGAGCGCCTCAGAGAAGCGGCAACACA
CGGCTTTAAGCGCGCCATTGTGCCAAAAGCCAACGCACCCAAGAGTGCCATCAAGGACATGCAGATCATCGCCGTAGAAC
GCCTGGATCAGGCGCTGGAAGCAAGCTATTGA

Domains

Predicted by InterProScan.

AAA domain (AAA_25)

(91-230)

Subunit ChlI of Mg-chelatase (ChlI)

(359-438)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(13-38)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

45.633

98.92

0.451
  radA Streptococcus pneumoniae Rx1

42.702

99.136

0.423
  radA Streptococcus pneumoniae D39

42.702

99.136

0.423
  radA Streptococcus pneumoniae R6

42.702

99.136

0.423
  radA Streptococcus pneumoniae TIGR4

42.702

99.136

0.423
  radA Streptococcus mitis NCTC 12261

42.702

99.136

0.423
  radA Streptococcus mitis SK321

42.484

99.136

0.421