Detailed information
Bioinformatically predicted
Overview
| Name | comM | Type | Machinery gene |
| Locus tag | P3X84_RS28215 | Genome accession | NZ_CP120969 |
| Coordinates | 6092806..6094296 (+) | Length | 496 a.a. |
| NCBI ID | WP_004575822.1 | Uniprot ID | A0AAD2WB14 |
| Organism | Pseudomonas putida strain AHSWHJXPP1 | ||
| Function | DNA uptake (predicted from homology) DNA binding and uptake |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 6077087..6135790 | 6092806..6094296 | within | 0 |
Gene organization within MGE regions
Location: 6077087..6135790
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| P3X84_RS28130 (P3X84_28130) | - | 6077261..6077713 (-) | 453 | WP_003253654.1 | YaiI/YqxD family protein | - |
| P3X84_RS28135 (P3X84_28135) | - | 6077880..6080735 (+) | 2856 | WP_004575828.1 | class I adenylate cyclase | - |
| P3X84_RS28140 (P3X84_28140) | rnk | 6080826..6081236 (-) | 411 | WP_003253652.1 | nucleoside diphosphate kinase regulator | - |
| P3X84_RS28145 (P3X84_28145) | - | 6081383..6081607 (-) | 225 | WP_003253651.1 | DUF1289 domain-containing protein | - |
| P3X84_RS28150 (P3X84_28150) | cyaY | 6081609..6081941 (-) | 333 | WP_004575827.1 | iron donor protein CyaY | - |
| P3X84_RS28155 (P3X84_28155) | - | 6082181..6082399 (+) | 219 | WP_003253649.1 | lipoprotein | - |
| P3X84_RS28160 (P3X84_28160) | lysA | 6082409..6083656 (+) | 1248 | WP_003253648.1 | diaminopimelate decarboxylase | - |
| P3X84_RS28165 (P3X84_28165) | dapF | 6083661..6084491 (+) | 831 | WP_003253647.1 | diaminopimelate epimerase | - |
| P3X84_RS28170 (P3X84_28170) | - | 6084505..6085215 (+) | 711 | WP_003253646.1 | DUF484 family protein | - |
| P3X84_RS28175 (P3X84_28175) | xerC | 6085215..6086114 (+) | 900 | WP_003253645.1 | tyrosine recombinase XerC | - |
| P3X84_RS28180 (P3X84_28180) | - | 6086111..6086806 (+) | 696 | WP_003253644.1 | HAD-IA family hydrolase | - |
| P3X84_RS28185 (P3X84_28185) | sutA | 6086905..6087234 (-) | 330 | WP_003253643.1 | transcriptional regulator SutA | - |
| P3X84_RS28190 (P3X84_28190) | - | 6087664..6088995 (-) | 1332 | WP_277836061.1 | ammonium transporter | - |
| P3X84_RS28195 (P3X84_28195) | glnK | 6089042..6089380 (-) | 339 | WP_002555808.1 | P-II family nitrogen regulator | - |
| P3X84_RS28200 (P3X84_28200) | - | 6089900..6090166 (+) | 267 | WP_003253640.1 | accessory factor UbiK family protein | - |
| P3X84_RS28205 (P3X84_28205) | - | 6090167..6090520 (+) | 354 | WP_004575824.1 | gamma-glutamylcyclotransferase family protein | - |
| P3X84_RS28210 (P3X84_28210) | - | 6090474..6092543 (-) | 2070 | WP_082423805.1 | DUF4034 domain-containing protein | - |
| P3X84_RS28215 (P3X84_28215) | comM | 6092806..6094296 (+) | 1491 | WP_004575822.1 | YifB family Mg chelatase-like AAA ATPase | Machinery gene |
| P3X84_RS28220 (P3X84_28220) | - | 6094364..6094732 (-) | 369 | WP_173881306.1 | response regulator | - |
| P3X84_RS28225 (P3X84_28225) | - | 6094729..6095721 (-) | 993 | WP_060538710.1 | response regulator | - |
| P3X84_RS28230 (P3X84_28230) | - | 6095961..6101009 (+) | 5049 | WP_060538709.1 | ATP-binding sensor histidine kinase | - |
| P3X84_RS28235 (P3X84_28235) | ycaC | 6101106..6101732 (-) | 627 | WP_003253573.1 | isochorismate family cysteine hydrolase YcaC | - |
| P3X84_RS28240 (P3X84_28240) | - | 6101807..6102169 (-) | 363 | WP_012054076.1 | AraC family transcriptional regulator | - |
| P3X84_RS28245 (P3X84_28245) | - | 6102350..6103336 (+) | 987 | WP_054888384.1 | GlxA family transcriptional regulator | - |
| P3X84_RS28250 (P3X84_28250) | - | 6103536..6105323 (+) | 1788 | WP_003253568.1 | monovalent cation:proton antiporter-2 (CPA2) family protein | - |
| P3X84_RS28255 (P3X84_28255) | - | 6106013..6106306 (+) | 294 | WP_004575818.1 | hypothetical protein | - |
| P3X84_RS28260 (P3X84_28260) | ycaC | 6106483..6107112 (-) | 630 | WP_003253564.1 | isochorismate family cysteine hydrolase YcaC | - |
| P3X84_RS28265 (P3X84_28265) | - | 6107341..6108252 (+) | 912 | WP_003253563.1 | LysR substrate-binding domain-containing protein | - |
| P3X84_RS28270 (P3X84_28270) | - | 6108460..6109722 (+) | 1263 | WP_060538449.1 | OprD family porin | - |
| P3X84_RS28275 (P3X84_28275) | - | 6109724..6111322 (+) | 1599 | WP_060538448.1 | MFS transporter | - |
| P3X84_RS28280 (P3X84_28280) | - | 6111457..6113439 (-) | 1983 | WP_003253557.1 | amidohydrolase | - |
| P3X84_RS28285 (P3X84_28285) | - | 6113639..6114457 (-) | 819 | WP_003253555.1 | alpha/beta hydrolase | - |
| P3X84_RS28290 (P3X84_28290) | - | 6114498..6114806 (-) | 309 | WP_003253554.1 | hypothetical protein | - |
| P3X84_RS28295 (P3X84_28295) | ycaC | 6114924..6115553 (-) | 630 | WP_003253552.1 | isochorismate family cysteine hydrolase YcaC | - |
| P3X84_RS28300 (P3X84_28300) | - | 6115875..6117302 (+) | 1428 | WP_003253551.1 | mechanosensitive ion channel domain-containing protein | - |
| P3X84_RS28305 (P3X84_28305) | - | 6117411..6118697 (-) | 1287 | WP_060538447.1 | FAD-binding oxidoreductase | - |
| P3X84_RS28310 (P3X84_28310) | - | 6118855..6120345 (-) | 1491 | WP_003253547.1 | aldehyde dehydrogenase family protein | - |
| P3X84_RS28315 (P3X84_28315) | - | 6120481..6121371 (+) | 891 | WP_003253545.1 | LysR family transcriptional regulator | - |
| P3X84_RS28320 (P3X84_28320) | - | 6121575..6122969 (+) | 1395 | WP_004575228.1 | VOC family protein | - |
| P3X84_RS28325 (P3X84_28325) | - | 6123022..6123948 (-) | 927 | WP_012054085.1 | LysR substrate-binding domain-containing protein | - |
| P3X84_RS28330 (P3X84_28330) | - | 6124106..6125494 (+) | 1389 | WP_060538446.1 | NorM family multidrug efflux MATE transporter | - |
| P3X84_RS28335 (P3X84_28335) | - | 6125676..6127343 (-) | 1668 | WP_004575225.1 | bifunctional diguanylate cyclase/phosphodiesterase | - |
| P3X84_RS28340 (P3X84_28340) | rep | 6127641..6129650 (+) | 2010 | WP_003253537.1 | DNA helicase Rep | - |
| P3X84_RS28345 (P3X84_28345) | - | 6129715..6130287 (+) | 573 | WP_003253535.1 | xanthine phosphoribosyltransferase | - |
| P3X84_RS28350 (P3X84_28350) | - | 6130398..6132257 (-) | 1860 | WP_054888378.1 | acetyl-CoA hydrolase/transferase C-terminal domain-containing protein | - |
| P3X84_RS28355 (P3X84_28355) | - | 6132336..6133091 (-) | 756 | Protein_5560 | RHS repeat-associated core domain-containing protein | - |
| P3X84_RS28360 (P3X84_28360) | - | 6133431..6133835 (-) | 405 | WP_033723760.1 | c-type cytochrome | - |
| P3X84_RS28365 (P3X84_28365) | - | 6133990..6134538 (-) | 549 | WP_003253526.1 | cupin domain-containing protein | - |
| P3X84_RS28370 (P3X84_28370) | alr | 6134646..6135719 (-) | 1074 | WP_060538445.1 | alanine racemase | - |
Sequence
Protein
Download Length: 496 a.a. Molecular weight: 53045.04 Da Isoelectric Point: 7.8840
>NTDB_id=809715 P3X84_RS28215 WP_004575822.1 6092806..6094296(+) (comM) [Pseudomonas putida strain AHSWHJXPP1]
MSLALVHSRAQVGVQAPAVSVETHLANGLPHLTLVGLPETTVKESKDRVRSAIVNSGLKYPQRRITQNLAPADLPKDGGR
YDLAIALGILAADGQVPIATLVDMECLGELALSGKLRPVQGVLPAALAAREAGRALVVPRENAEEASLAGGLVVYAVGHL
LELVAHLNGQVPLPPYAANGLILQQRPYPDLSEVQGQLAAKRALLLAAAGAHNLLFTGPPGTGKTLLASRLPGLLPPLDE
HEALEVAAIQSVSGKAPLNSWPQRPFRHPHHSASGPALVGGGSRPQPGEITLAHHGVLFLDELPEFERRVLEVLREPLES
GEIVIARARDKVRFPARFQLVAAMNPCPCGYLGDPTGRCRCSTEQIARYRNKLSGPLLDRIDLHLTVARESTTLNNQPCG
ETSADVAVRVAEARELQHRRQGCANAFLDLEGLRHHCGLVAADQVWLEGACERLTLSLRAAHRLLKVARTLADLEGCEKI
GRTHLAEALQYRPGSS
MSLALVHSRAQVGVQAPAVSVETHLANGLPHLTLVGLPETTVKESKDRVRSAIVNSGLKYPQRRITQNLAPADLPKDGGR
YDLAIALGILAADGQVPIATLVDMECLGELALSGKLRPVQGVLPAALAAREAGRALVVPRENAEEASLAGGLVVYAVGHL
LELVAHLNGQVPLPPYAANGLILQQRPYPDLSEVQGQLAAKRALLLAAAGAHNLLFTGPPGTGKTLLASRLPGLLPPLDE
HEALEVAAIQSVSGKAPLNSWPQRPFRHPHHSASGPALVGGGSRPQPGEITLAHHGVLFLDELPEFERRVLEVLREPLES
GEIVIARARDKVRFPARFQLVAAMNPCPCGYLGDPTGRCRCSTEQIARYRNKLSGPLLDRIDLHLTVARESTTLNNQPCG
ETSADVAVRVAEARELQHRRQGCANAFLDLEGLRHHCGLVAADQVWLEGACERLTLSLRAAHRLLKVARTLADLEGCEKI
GRTHLAEALQYRPGSS
Nucleotide
Download Length: 1491 bp
>NTDB_id=809715 P3X84_RS28215 WP_004575822.1 6092806..6094296(+) (comM) [Pseudomonas putida strain AHSWHJXPP1]
ATGTCTCTAGCCCTCGTCCACAGCCGCGCCCAGGTAGGCGTGCAGGCACCGGCGGTCAGCGTCGAAACCCACCTGGCCAA
CGGCCTGCCTCATCTCACCCTGGTCGGCCTGCCGGAAACCACGGTCAAGGAAAGCAAGGACCGGGTGCGCAGCGCCATCG
TCAACTCCGGGCTGAAGTACCCGCAGCGGCGCATTACCCAGAACCTCGCCCCCGCCGACCTGCCCAAGGATGGCGGCCGA
TATGACCTGGCCATCGCCCTGGGCATCCTCGCCGCCGACGGCCAGGTGCCGATTGCCACCCTGGTCGATATGGAATGCCT
GGGCGAACTGGCGCTGTCGGGGAAATTGCGCCCGGTGCAGGGCGTGCTGCCTGCGGCACTGGCGGCACGCGAAGCAGGCC
GGGCGCTGGTGGTACCACGGGAAAATGCCGAGGAAGCCAGCCTGGCCGGCGGGTTGGTGGTGTATGCGGTGGGCCACCTG
CTGGAGTTGGTCGCCCACCTGAACGGCCAGGTGCCGCTGCCGCCCTACGCAGCCAACGGCCTGATCCTGCAGCAACGCCC
CTACCCGGACCTGAGCGAAGTGCAGGGCCAACTGGCAGCCAAGCGTGCCTTGCTGCTGGCTGCGGCCGGGGCGCACAACC
TGTTGTTCACCGGGCCGCCCGGCACCGGCAAGACCTTGCTCGCCAGCCGCCTGCCCGGGCTGCTGCCACCGCTGGACGAG
CACGAAGCGCTGGAAGTGGCGGCAATCCAGTCGGTCAGCGGGAAAGCGCCGCTGAACAGCTGGCCACAGCGCCCCTTTCG
CCATCCCCATCACTCTGCTTCCGGCCCGGCGCTGGTCGGTGGCGGTAGCCGACCGCAACCAGGTGAAATCACGCTCGCCC
ATCACGGCGTGTTGTTTCTCGACGAACTTCCGGAGTTTGAGCGGCGCGTACTGGAAGTGCTTCGCGAGCCACTGGAGTCA
GGTGAAATCGTGATTGCCCGTGCCCGCGACAAAGTGCGTTTCCCCGCGCGCTTCCAGCTGGTGGCGGCGATGAACCCCTG
CCCTTGCGGCTACCTGGGCGACCCCACTGGCCGCTGCCGCTGCAGCACCGAGCAGATCGCGCGCTATCGCAACAAGCTGT
CCGGGCCACTGCTGGACCGCATCGACCTGCACCTGACCGTGGCTCGCGAGAGCACTACATTGAACAACCAGCCTTGCGGT
GAAACCAGTGCCGATGTCGCCGTCAGGGTGGCTGAAGCGCGGGAGCTGCAGCACAGGCGACAAGGGTGTGCGAATGCATT
TCTCGACCTTGAAGGTTTAAGGCATCACTGTGGGTTGGTAGCGGCGGACCAAGTCTGGCTGGAAGGGGCCTGCGAGCGGC
TGACCTTGTCGCTACGCGCGGCGCACCGGTTGTTGAAGGTGGCGCGGACGTTGGCGGACCTGGAGGGATGCGAGAAGATT
GGCCGGACGCACCTGGCCGAGGCCCTGCAGTACCGGCCGGGGAGCAGTTAG
ATGTCTCTAGCCCTCGTCCACAGCCGCGCCCAGGTAGGCGTGCAGGCACCGGCGGTCAGCGTCGAAACCCACCTGGCCAA
CGGCCTGCCTCATCTCACCCTGGTCGGCCTGCCGGAAACCACGGTCAAGGAAAGCAAGGACCGGGTGCGCAGCGCCATCG
TCAACTCCGGGCTGAAGTACCCGCAGCGGCGCATTACCCAGAACCTCGCCCCCGCCGACCTGCCCAAGGATGGCGGCCGA
TATGACCTGGCCATCGCCCTGGGCATCCTCGCCGCCGACGGCCAGGTGCCGATTGCCACCCTGGTCGATATGGAATGCCT
GGGCGAACTGGCGCTGTCGGGGAAATTGCGCCCGGTGCAGGGCGTGCTGCCTGCGGCACTGGCGGCACGCGAAGCAGGCC
GGGCGCTGGTGGTACCACGGGAAAATGCCGAGGAAGCCAGCCTGGCCGGCGGGTTGGTGGTGTATGCGGTGGGCCACCTG
CTGGAGTTGGTCGCCCACCTGAACGGCCAGGTGCCGCTGCCGCCCTACGCAGCCAACGGCCTGATCCTGCAGCAACGCCC
CTACCCGGACCTGAGCGAAGTGCAGGGCCAACTGGCAGCCAAGCGTGCCTTGCTGCTGGCTGCGGCCGGGGCGCACAACC
TGTTGTTCACCGGGCCGCCCGGCACCGGCAAGACCTTGCTCGCCAGCCGCCTGCCCGGGCTGCTGCCACCGCTGGACGAG
CACGAAGCGCTGGAAGTGGCGGCAATCCAGTCGGTCAGCGGGAAAGCGCCGCTGAACAGCTGGCCACAGCGCCCCTTTCG
CCATCCCCATCACTCTGCTTCCGGCCCGGCGCTGGTCGGTGGCGGTAGCCGACCGCAACCAGGTGAAATCACGCTCGCCC
ATCACGGCGTGTTGTTTCTCGACGAACTTCCGGAGTTTGAGCGGCGCGTACTGGAAGTGCTTCGCGAGCCACTGGAGTCA
GGTGAAATCGTGATTGCCCGTGCCCGCGACAAAGTGCGTTTCCCCGCGCGCTTCCAGCTGGTGGCGGCGATGAACCCCTG
CCCTTGCGGCTACCTGGGCGACCCCACTGGCCGCTGCCGCTGCAGCACCGAGCAGATCGCGCGCTATCGCAACAAGCTGT
CCGGGCCACTGCTGGACCGCATCGACCTGCACCTGACCGTGGCTCGCGAGAGCACTACATTGAACAACCAGCCTTGCGGT
GAAACCAGTGCCGATGTCGCCGTCAGGGTGGCTGAAGCGCGGGAGCTGCAGCACAGGCGACAAGGGTGTGCGAATGCATT
TCTCGACCTTGAAGGTTTAAGGCATCACTGTGGGTTGGTAGCGGCGGACCAAGTCTGGCTGGAAGGGGCCTGCGAGCGGC
TGACCTTGTCGCTACGCGCGGCGCACCGGTTGTTGAAGGTGGCGCGGACGTTGGCGGACCTGGAGGGATGCGAGAAGATT
GGCCGGACGCACCTGGCCGAGGCCCTGCAGTACCGGCCGGGGAGCAGTTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comM | Vibrio campbellii strain DS40M4 |
56.048 |
100 |
0.56 |
| comM | Haemophilus influenzae Rd KW20 |
55.4 |
100 |
0.558 |
| comM | Vibrio cholerae strain A1552 |
55.556 |
99.798 |
0.554 |
| comM | Glaesserella parasuis strain SC1401 |
54.291 |
100 |
0.548 |
| comM | Legionella pneumophila str. Paris |
49.395 |
100 |
0.494 |
| comM | Legionella pneumophila strain ERS1305867 |
49.395 |
100 |
0.494 |
| RA0C_RS07335 | Riemerella anatipestifer ATCC 11845 = DSM 15868 |
47.61 |
100 |
0.482 |