Detailed information NTG0809695

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: P3X84_RS03640
• Genome accession: NZ_CP120969
• Coordinates: 785152..786018 (-)
• Length: 288 a.a.
• NCBI ID: WP_277836131.1
• Uniprot ID: -
• Organism: Pseudomonas putida strain AHSWHJXPP1
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 780152..791018

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
P3X84_RS03605 (P3X84_03605)	-	780626..781921 (-)	1296	WP_003247549.1	NAD(P)/FAD-dependent oxidoreductase	-
P3X84_RS03610 (P3X84_03610)	-	782006..782179 (-)	174	WP_008091951.1	DUF3094 domain-containing protein	-
P3X84_RS03615 (P3X84_03615)	-	782312..782941 (-)	630	WP_003247546.1	DUF1780 domain-containing protein	-
P3X84_RS03620 (P3X84_03620)	-	782997..783428 (-)	432	WP_060538607.1	hypothetical protein	-
P3X84_RS03625 (P3X84_03625)	-	783515..784222 (+)	708	WP_060538606.1	energy-coupling factor ABC transporter permease	-
P3X84_RS03630 (P3X84_03630)	yacG	784332..784532 (-)	201	WP_003247540.1	DNA gyrase inhibitor YacG	-
P3X84_RS03635 (P3X84_03635)	coaE	784529..785152 (-)	624	WP_004575721.1	dephospho-CoA kinase	-
P3X84_RS03640 (P3X84_03640)	pilD	785152..786018 (-)	867	WP_277836131.1	A24 family peptidase	Machinery gene
P3X84_RS03645 (P3X84_03645)	-	786021..787229 (-)	1209	WP_054888521.1	type II secretion system F family protein	-
P3X84_RS03650 (P3X84_03650)	-	787446..787856 (+)	411	WP_012051131.1	pilin	-
P3X84_RS03660 (P3X84_03660)	-	788167..789375 (+)	1209	WP_277836132.1	integrase arm-type DNA-binding domain-containing protein	-
P3X84_RS03665 (P3X84_03665)	-	789376..789588 (-)	213	WP_060538604.1	AlpA family transcriptional regulator	-
P3X84_RS03670 (P3X84_03670)	-	789608..790084 (-)	477	WP_277836133.1	SAM-dependent methyltransferase	-
P3X84_RS03675 (P3X84_03675)	-	790092..790304 (-)	213	WP_277836134.1	hypothetical protein	-

Sequence

Protein

• Length: 288 a.a.
• Molecular weight: 31782.79 Da
• Isoelectric Point: 7.9101

>NTDB_id=809695 P3X84_RS03640 WP_277836131.1 785152..786018(-) (pilD) [Pseudomonas putida strain AHSWHJXPP1]
MTLWALLAEQPAYFLTLATVLGLLVGSFINVLVYRLPIMLERQWQREAQEVLGLPTTQHPRFDLCLPASRCPHCAHRIRA
WENIPVISYLALGGRCSSCKNRISLRYPVVEVASALLSLVVAWRFGASVEALLALPLTWCLLALSLIDADHQLLPDVLVL
PTMWLGLIVNAFGIHVPLADALWGAVAGYLSLWTVYWVFRLVTGKEGMGYGDFKLMALIGAWGGWQVLPLTLLLSSVVGA
LVGLCSLRFRRHALGTAIPFGPYLAIAGWIAVLWGDEIYASYIQLLGY

Nucleotide

• Length: 867 bp

>NTDB_id=809695 P3X84_RS03640 WP_277836131.1 785152..786018(-) (pilD) [Pseudomonas putida strain AHSWHJXPP1]
ATGACTTTATGGGCTTTGCTGGCTGAACAGCCAGCGTATTTCCTCACCCTTGCCACGGTGCTCGGCCTGCTGGTGGGCAG
CTTTATCAACGTGCTGGTGTATCGCCTGCCGATCATGCTGGAGCGGCAATGGCAGCGTGAGGCGCAAGAGGTATTGGGGC
TGCCGACCACGCAGCACCCGCGTTTCGACCTGTGCCTGCCCGCCTCCCGGTGCCCACACTGCGCGCACCGGATTCGTGCG
TGGGAGAACATTCCGGTCATCAGCTACCTGGCCTTGGGCGGGCGCTGTTCGTCCTGCAAAAACCGCATCAGCCTGCGTTA
CCCGGTAGTGGAAGTGGCCAGCGCGCTGCTGTCGCTGGTAGTGGCCTGGCGCTTCGGCGCTTCGGTAGAGGCGTTGCTGG
CGTTGCCGCTGACCTGGTGCCTGCTGGCGCTGAGCCTGATCGATGCGGACCACCAGCTGCTGCCGGATGTGCTGGTGCTG
CCGACCATGTGGCTAGGGCTGATCGTCAATGCCTTTGGCATCCATGTGCCCCTGGCCGACGCACTGTGGGGCGCAGTGGC
CGGGTACCTCAGCCTGTGGACGGTGTACTGGGTGTTCAGGCTGGTCACCGGCAAGGAAGGCATGGGCTATGGCGATTTCA
AGCTGATGGCGCTGATCGGGGCGTGGGGGGGTTGGCAGGTGCTGCCGTTGACGCTGCTGTTGTCGTCGGTGGTGGGGGCG
CTTGTTGGCCTGTGCTCGCTGCGTTTTCGCCGGCATGCCTTGGGCACGGCTATCCCGTTTGGCCCTTATCTGGCAATTGC
GGGGTGGATTGCCGTGCTCTGGGGTGATGAAATATACGCCTCATACATACAACTGCTTGGATACTGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (137-244)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-125)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	51.986	96.181	0.5
pilD	Acinetobacter baumannii D1279779	48.754	97.569	0.476
pilD	Acinetobacter nosocomialis M2	48.043	97.569	0.469
pilD	Vibrio campbellii strain DS40M4	49.091	95.486	0.469
pilD	Neisseria gonorrhoeae MS11	49.071	93.403	0.458