Detailed information NTG0809486

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: RPM47_RS01295
• Genome accession: NZ_CP135098
• Coordinates: 286168..287040 (+)
• Length: 290 a.a.
• NCBI ID: WP_003161765.1
• Uniprot ID: -
• Organism: Pseudomonas aeruginosa strain Paer2090
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 281168..292040

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RPM47_RS01280 (RPM47_01280)	pilA/pilAI	282548..283015 (-)	468	WP_003161762.1	pilin	Machinery gene
RPM47_RS01285 (RPM47_01285)	pilB	283246..284946 (+)	1701	WP_003122078.1	type IV-A pilus assembly ATPase PilB	Machinery gene
RPM47_RS01290 (RPM47_01290)	pilC	284950..286167 (+)	1218	WP_003161763.1	type II secretion system F family protein	Machinery gene
RPM47_RS01295 (RPM47_01295)	pilD	286168..287040 (+)	873	WP_003161765.1	type IV prepilin peptidase/methyltransferase PilD	Machinery gene
RPM47_RS01300 (RPM47_01300)	coaE	287037..287648 (+)	612	WP_003094654.1	dephospho-CoA kinase	-
RPM47_RS01305 (RPM47_01305)	yacG	287645..287845 (+)	201	WP_003094656.1	DNA gyrase inhibitor YacG	-
RPM47_RS01310 (RPM47_01310)	-	287882..288091 (-)	210	WP_020750398.1	hypothetical protein	-
RPM47_RS01315 (RPM47_01315)	-	288197..288886 (-)	690	WP_003103868.1	energy-coupling factor ABC transporter permease	-
RPM47_RS01320 (RPM47_01320)	-	288883..289353 (-)	471	WP_003094664.1	hypothetical protein	-
RPM47_RS01325 (RPM47_01325)	-	289350..289775 (-)	426	WP_003161766.1	GNAT family N-acetyltransferase	-
RPM47_RS01330 (RPM47_01330)	-	289908..290537 (+)	630	WP_003094668.1	DUF1780 domain-containing protein	-
RPM47_RS01335 (RPM47_01335)	-	290534..290983 (+)	450	WP_003094670.1	MOSC domain-containing protein	-
RPM47_RS01340 (RPM47_01340)	-	291009..291179 (+)	171	WP_003094672.1	DUF3094 family protein	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 31873.90 Da
• Isoelectric Point: 7.7068

>NTDB_id=809486 RPM47_RS01295 WP_003161765.1 286168..287040(+) (pilD) [Pseudomonas aeruginosa strain Paer2090]
MTLLDYLASHPLAFVLCAILLGLLVGSFLNVVVHRLPKMMERNWKAEAREALGLEPEPKQATYNLVLPNSACPRCGHEIR
PWENIPLVSYLALGGKCSSCKAAIGKRYPLVELATALLSGYVAWHFGFTWQAGAMLLLTWGLLAMSLIDADHQLLPDVLV
LPLLWLGLIANHFGLFASLDDALFGTVFGYLSLWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTILLSSLVG
AILGVIMLRLRNAESGTPIPFGPYLAIAGWIALLWGDQITRTYLQFAGFK

Nucleotide

• Length: 873 bp

>NTDB_id=809486 RPM47_RS01295 WP_003161765.1 286168..287040(+) (pilD) [Pseudomonas aeruginosa strain Paer2090]
ATGACCCTCCTCGACTACCTGGCCAGCCATCCGCTGGCCTTTGTCTTGTGCGCTATCCTCCTTGGCCTGCTGGTTGGCAG
CTTCCTCAACGTCGTCGTGCATCGCCTGCCGAAGATGATGGAGCGCAACTGGAAGGCCGAGGCCCGCGAAGCGCTCGGGC
TGGAGCCGGAACCCAAGCAGGCGACCTACAACCTGGTGCTGCCGAATTCGGCGTGCCCGCGCTGCGGCCACGAGATCCGC
CCCTGGGAAAACATCCCGCTGGTCAGCTACCTGGCGCTGGGCGGCAAGTGCTCGTCCTGCAAGGCCGCCATCGGCAAACG
CTACCCCCTGGTGGAACTGGCCACCGCGCTGCTTTCCGGCTACGTCGCCTGGCATTTCGGCTTCACCTGGCAGGCGGGCG
CGATGCTCCTGCTGACCTGGGGTCTGCTGGCGATGAGCCTGATCGATGCCGATCACCAACTGCTGCCGGACGTGCTGGTG
CTGCCGCTGCTCTGGCTGGGCCTGATCGCCAACCATTTCGGCCTCTTCGCCAGCCTCGACGATGCGCTGTTCGGCACGGT
GTTCGGCTACCTGAGCCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGGTGACCGGCAAGGAGGGCATGGGCTACGGCGACT
TCAAGCTGCTGGCCATGCTCGGTGCCTGGGGCGGCTGGCAGATCCTGCCGCTGACCATCCTGCTGTCGTCGCTGGTCGGG
GCGATCCTCGGGGTGATCATGCTGCGCCTGCGCAACGCCGAAAGCGGCACGCCGATCCCCTTCGGTCCCTATCTGGCGAT
TGCCGGGTGGATTGCTTTGCTCTGGGGTGATCAAATAACCCGGACCTATCTGCAATTCGCCGGATTCAAATGA

Domains

Predicted by InterProScan.

• Type IV leader peptidase family (Peptidase_A24) (137-245)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	55.357	96.552	0.534
pilD	Vibrio campbellii strain DS40M4	52.65	97.586	0.514
pilD	Acinetobacter nosocomialis M2	50.53	97.586	0.493
pilD	Acinetobacter baumannii D1279779	50.53	97.586	0.493
pilD	Neisseria gonorrhoeae MS11	48.921	95.862	0.469