Detailed information NTG0809484

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: P5S46_RS18405
• Genome accession: NZ_CP120942
• Coordinates: 3969203..3970078 (+)
• Length: 291 a.a.
• NCBI ID: WP_277856346.1
• Uniprot ID: A0AAJ5Z9W4
• Organism: Aeromonas caviae strain AC1520
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3964203..3975078

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
P5S46_RS18385 (P5S46_18385)	nadC	3964433..3965296 (+)	864	WP_128341717.1	carboxylating nicotinate-nucleotide diphosphorylase	-
P5S46_RS18390 (P5S46_18390)	-	3965607..3966050 (+)	444	WP_277856343.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
P5S46_RS18395 (P5S46_18395)	pilB	3966050..3967756 (+)	1707	WP_277856344.1	PilB family type IVa pilus assembly ATPase TapB	Machinery gene
P5S46_RS18400 (P5S46_18400)	pilC	3967884..3969125 (+)	1242	WP_277856345.1	type II secretion system F family protein	Machinery gene
P5S46_RS18405 (P5S46_18405)	pilD	3969203..3970078 (+)	876	WP_277856346.1	A24 family peptidase	Machinery gene
P5S46_RS18410 (P5S46_18410)	coaE	3970097..3970711 (+)	615	WP_042864857.1	dephospho-CoA kinase	-
P5S46_RS18415 (P5S46_18415)	zapD	3970749..3971471 (+)	723	WP_010675825.1	cell division protein ZapD	-
P5S46_RS18420 (P5S46_18420)	yacG	3971482..3971676 (+)	195	WP_039040499.1	DNA gyrase inhibitor YacG	-
P5S46_RS18425 (P5S46_18425)	mutT	3971734..3972138 (-)	405	WP_174213873.1	8-oxo-dGTP diphosphatase MutT	-
P5S46_RS18430 (P5S46_18430)	-	3972147..3973331 (-)	1185	WP_277856347.1	tetratricopeptide repeat protein	-

Sequence

Protein

• Length: 291 a.a.
• Molecular weight: 32013.14 Da
• Isoelectric Point: 6.8227

>NTDB_id=809484 P5S46_RS18405 WP_277856346.1 3969203..3970078(+) (pilD) [Aeromonas caviae strain AC1520]
MVPLIELAQGLPWLYLSLIFLFSLMVGSFLNVVIHRLPIMMEQAWHAEYSDYFGNGEETPPATGRYNLMVPRSRCPHCDH
PIGALENIPLLSWLCLRGRCRNCHAPISARYPLVELLTALLSVSVAAALAPGWGTLAALLLTWTLVALTFIDLDKMLLPD
QLTLPLLWGGLLFNLAGGFVPLADAVIGTMAGYLVLWSLYWAFKLLTGKEGMGYGDFKLLAALSAWLGWQALPIVLLLSS
LAGAIIGIGLILLRNHHQGKPIPFGPYLAIAGWITLLWGDSITRWYLDVVL

Nucleotide

• Length: 876 bp

>NTDB_id=809484 P5S46_RS18405 WP_277856346.1 3969203..3970078(+) (pilD) [Aeromonas caviae strain AC1520]
ATGGTGCCTTTGATCGAACTGGCCCAGGGCTTGCCCTGGCTCTATCTCTCCTTGATTTTCCTTTTCTCCCTGATGGTGGG
CAGCTTCCTGAACGTGGTGATCCATCGTCTGCCCATCATGATGGAGCAGGCCTGGCATGCCGAATACAGCGACTATTTCG
GTAACGGTGAAGAGACTCCTCCTGCAACCGGACGATACAACCTCATGGTGCCTCGCTCCCGCTGCCCCCACTGCGACCAC
CCCATAGGGGCGCTGGAGAACATTCCCCTGCTGAGCTGGCTATGCCTCAGAGGGCGCTGCCGCAACTGCCACGCCCCCAT
TTCGGCTCGCTATCCCCTGGTCGAGCTGCTCACCGCACTGCTGTCGGTCTCGGTGGCAGCCGCGCTTGCCCCTGGCTGGG
GCACCCTTGCCGCTCTGCTGCTCACCTGGACATTGGTCGCACTGACCTTCATCGACCTGGACAAGATGCTCTTGCCGGAT
CAGCTCACCCTGCCCCTGCTATGGGGTGGCCTGCTGTTCAATCTGGCGGGCGGTTTCGTGCCCCTGGCCGATGCGGTGAT
CGGTACCATGGCGGGCTATCTGGTGCTCTGGAGCCTCTACTGGGCCTTCAAGCTGCTGACCGGCAAGGAAGGGATGGGCT
ATGGCGACTTCAAACTGCTGGCGGCGCTGAGCGCCTGGCTGGGATGGCAAGCATTGCCCATCGTGCTGCTGCTCTCTTCG
CTGGCGGGCGCCATCATCGGCATCGGTCTCATCCTGCTGCGCAACCACCACCAGGGCAAACCCATTCCCTTTGGCCCCTA
TCTCGCCATCGCGGGCTGGATAACGCTGCTGTGGGGCGATAGCATCACCCGCTGGTATCTTGATGTCGTGCTCTAG

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (140-248)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-127)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	60.49	98.282	0.595
pilD	Vibrio campbellii strain DS40M4	56.552	99.656	0.564
pilD	Acinetobacter baumannii D1279779	52.688	95.876	0.505
pilD	Acinetobacter nosocomialis M2	52.688	95.876	0.505
pilD	Neisseria gonorrhoeae MS11	50.958	89.691	0.457