Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   RPM47_RS01290 Genome accession   NZ_CP135098
Coordinates   284950..286167 (+) Length   405 a.a.
NCBI ID   WP_003161763.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain Paer2090     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 279950..291167
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RPM47_RS01265 (RPM47_01265) nadC 280049..280897 (+) 849 WP_003161760.1 carboxylating nicotinate-nucleotide diphosphorylase -
  RPM47_RS01275 (RPM47_01275) - 281078..282526 (-) 1449 WP_238569791.1 O-antigen ligase family protein -
  RPM47_RS01280 (RPM47_01280) pilA/pilAI 282548..283015 (-) 468 WP_003161762.1 pilin Machinery gene
  RPM47_RS01285 (RPM47_01285) pilB 283246..284946 (+) 1701 WP_003122078.1 type IV-A pilus assembly ATPase PilB Machinery gene
  RPM47_RS01290 (RPM47_01290) pilC 284950..286167 (+) 1218 WP_003161763.1 type II secretion system F family protein Machinery gene
  RPM47_RS01295 (RPM47_01295) pilD 286168..287040 (+) 873 WP_003161765.1 type IV prepilin peptidase/methyltransferase PilD Machinery gene
  RPM47_RS01300 (RPM47_01300) coaE 287037..287648 (+) 612 WP_003094654.1 dephospho-CoA kinase -
  RPM47_RS01305 (RPM47_01305) yacG 287645..287845 (+) 201 WP_003094656.1 DNA gyrase inhibitor YacG -
  RPM47_RS01310 (RPM47_01310) - 287882..288091 (-) 210 WP_020750398.1 hypothetical protein -
  RPM47_RS01315 (RPM47_01315) - 288197..288886 (-) 690 WP_003103868.1 energy-coupling factor ABC transporter permease -
  RPM47_RS01320 (RPM47_01320) - 288883..289353 (-) 471 WP_003094664.1 hypothetical protein -
  RPM47_RS01325 (RPM47_01325) - 289350..289775 (-) 426 WP_003161766.1 GNAT family N-acetyltransferase -
  RPM47_RS01330 (RPM47_01330) - 289908..290537 (+) 630 WP_003094668.1 DUF1780 domain-containing protein -
  RPM47_RS01335 (RPM47_01335) - 290534..290983 (+) 450 WP_003094670.1 MOSC domain-containing protein -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 43998.80 Da        Isoelectric Point: 9.8103

>NTDB_id=809485 RPM47_RS01290 WP_003161763.1 284950..286167(+) (pilC) [Pseudomonas aeruginosa strain Paer2090]
MADKALKTSVFVWEGTDKKGTKVKGELSSQNPTLVKAQLRKQGITPVKVRKKGISLLGAGKKIKPMDIALFTRQMSTMMA
AGVPLLQSFDIISEGFDNPNMRKLVEEIKQEVAGGNSLANSLRKKPQYFDSLYCNLVDAGEQSGALETLLDRVATYKEKT
EALKAKIKKAMTYPIAVIVVAIIVSAILLIKVVPQFQSVFEGFGAELPAFTQMVINISNVLQEWWLLVLLMMGGAGFLLN
HAYKRSEKFRDATDRTVLKLPIVGAILYKSAVARYARTLSTTFAAGVPLVEALDSVSGATGNVVFRDAVGKIKQDVSTGM
QLNFSMRTTNIFPSMAIQMTAIGEESGALDDMLAKVAGFYEQEVDNAVDNLTALMEPMIMAVLGVLVGGLIIAMYLPIFQ
LGNVV

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=809485 RPM47_RS01290 WP_003161763.1 284950..286167(+) (pilC) [Pseudomonas aeruginosa strain Paer2090]
ATGGCGGACAAAGCGTTAAAGACCAGTGTCTTCGTATGGGAAGGCACTGACAAGAAAGGCACCAAGGTCAAGGGCGAGCT
GTCCAGCCAGAACCCGACCCTGGTCAAGGCGCAACTGCGCAAGCAGGGCATCACGCCGGTCAAGGTCCGCAAGAAAGGCA
TCTCCCTGCTGGGGGCGGGGAAGAAGATCAAGCCTATGGACATCGCCCTGTTCACCCGCCAGATGTCCACCATGATGGCC
GCCGGCGTGCCGCTGCTGCAGTCGTTCGACATCATCAGCGAAGGCTTCGACAATCCGAACATGCGCAAGCTGGTGGAGGA
GATCAAGCAGGAAGTTGCCGGCGGCAACAGCCTGGCCAACTCGCTGCGCAAGAAGCCGCAGTACTTCGACTCGCTCTACT
GCAACCTGGTGGACGCCGGCGAACAATCCGGCGCCCTGGAAACCCTGCTCGACCGGGTCGCCACCTACAAGGAAAAGACC
GAGGCGCTGAAGGCCAAGATCAAGAAGGCCATGACCTACCCGATCGCGGTGATCGTCGTCGCCATCATCGTTTCGGCGAT
CCTACTGATCAAGGTGGTGCCGCAGTTCCAGTCGGTGTTCGAGGGCTTCGGCGCCGAACTGCCGGCCTTCACCCAAATGG
TCATCAATATCTCCAACGTGCTCCAGGAATGGTGGCTCCTGGTACTGCTGATGATGGGCGGCGCCGGCTTCCTGCTGAAC
CACGCCTACAAGCGTTCGGAGAAGTTCCGCGACGCCACCGACCGCACGGTACTGAAGCTGCCTATCGTCGGCGCCATCCT
CTACAAATCCGCCGTGGCACGCTACGCGCGGACGCTGTCGACCACCTTCGCCGCCGGCGTGCCATTGGTGGAAGCCCTCG
ACTCGGTTTCCGGCGCCACCGGCAACGTGGTGTTCAGGGACGCGGTGGGCAAGATCAAGCAGGACGTGTCCACCGGCATG
CAGCTGAACTTCTCCATGCGCACCACCAACATCTTCCCCAGCATGGCCATCCAGATGACCGCCATCGGCGAGGAGTCGGG
CGCGCTGGACGACATGCTGGCCAAGGTCGCTGGCTTCTACGAGCAGGAAGTGGATAATGCCGTGGACAACCTGACCGCCC
TGATGGAACCGATGATCATGGCGGTCCTCGGGGTCCTGGTCGGTGGCCTGATCATCGCCATGTACCTGCCGATCTTCCAG
CTGGGCAACGTCGTCTAA

Domains

Predicted by InterProScan.

Type II secretion system (T2SS), protein F (T2SSF)

(276-397)

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

78.765

100

0.788
  pilC Acinetobacter baylyi ADP1

61.275

100

0.617
  pilC Acinetobacter baumannii D1279779

60.644

99.753

0.605
  pilC Legionella pneumophila strain ERS1305867

54.293

97.778

0.531
  pilG Neisseria gonorrhoeae MS11

46.287

99.753

0.462
  pilG Neisseria meningitidis 44/76-A

45.771

99.259

0.454
  pilC Vibrio cholerae strain A1552

41.728

100

0.417
  pilC Vibrio campbellii strain DS40M4

40.898

99.012

0.405
  pilC Thermus thermophilus HB27

38.155

99.012

0.378