Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   P5S46_RS18670 Genome accession   NZ_CP120942
Coordinates   4018628..4020067 (-) Length   479 a.a.
NCBI ID   WP_039040474.1    Uniprot ID   -
Organism   Aeromonas caviae strain AC1520     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4013628..4025067
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P5S46_RS18640 (P5S46_18640) - 4013907..4014647 (+) 741 WP_277856353.1 KDGP aldolase family protein -
  P5S46_RS18645 (P5S46_18645) - 4014751..4016655 (+) 1905 WP_182935711.1 HTH domain-containing protein -
  P5S46_RS18650 (P5S46_18650) npr 4016671..4016943 (-) 273 WP_010675868.1 PTS phosphocarrier protein NPr -
  P5S46_RS18655 (P5S46_18655) rapZ 4016964..4017830 (-) 867 WP_010675869.1 RNase adapter RapZ -
  P5S46_RS18660 (P5S46_18660) ptsN 4017871..4018317 (-) 447 WP_010675870.1 PTS IIA-like nitrogen regulatory protein PtsN -
  P5S46_RS18665 (P5S46_18665) hpf 4018320..4018607 (-) 288 WP_005305957.1 ribosome hibernation promoting factor -
  P5S46_RS18670 (P5S46_18670) rpoN/rpoN1 4018628..4020067 (-) 1440 WP_039040474.1 RNA polymerase factor sigma-54 Machinery gene
  P5S46_RS18675 (P5S46_18675) lptB 4020134..4020859 (-) 726 WP_010675872.1 LPS export ABC transporter ATP-binding protein -
  P5S46_RS18680 (P5S46_18680) lptA 4020872..4021390 (-) 519 WP_010675873.1 lipopolysaccharide transport periplasmic protein LptA -
  P5S46_RS18685 (P5S46_18685) lptC 4021377..4021937 (-) 561 WP_039040473.1 LPS export ABC transporter periplasmic protein LptC -
  P5S46_RS18690 (P5S46_18690) kdsC 4021934..4022488 (-) 555 WP_042864828.1 3-deoxy-manno-octulosonate-8-phosphatase KdsC -
  P5S46_RS18695 (P5S46_18695) - 4022488..4023483 (-) 996 WP_029314845.1 KpsF/GutQ family sugar-phosphate isomerase -
  P5S46_RS18700 (P5S46_18700) mlaF 4023690..4024490 (+) 801 WP_029314846.1 phospholipid ABC transporter ATP-binding protein MlaF -

Sequence

Protein


Download         Length: 479 a.a.        Molecular weight: 53761.57 Da        Isoelectric Point: 4.3728

>NTDB_id=809485 P5S46_RS18670 WP_039040474.1 4018628..4020067(-) (rpoN/rpoN1) [Aeromonas caviae strain AC1520]
MKPTLQLRLGQSLTMTPQLQQAIRLLQLSTLELQQEIQQALDNNPLLEQEENEAQETSQTETQDASQLDSSDAMAQESMP
DELPVDTTWDEVYSAGTAQSAGPIHDGEDSVYQGETTENLQDYLLWQMRLTPFSDVDAAIALAIIDAIDESGYLTATLED
IQAAVSSEEVEVELDEIEAVLKRVQHFDPVGIAARSVQECLLIQLGQYSPDLPWLDEAREVIREHMDLLGNRDYRTLARK
TRLKESDLKEVLDLIQQLEPRPGNGIIQSESQYVIPDVSVVKKGSKWVVELNPDSAPRIRVNEAYAAMARNARSSTDTQF
IRSHLQEAKWFIKSLESRNDTLLKVASCIVEQQQGFFEYGEEAMKPMVLNDIAEAVEMHESTISRVTTQKYMHTPRGIFE
LKFFFSSHVNTEGGGECSSTAIRALIKKLVTAENPAKPLSDSKIADLLAEQGIMVARRTIAKYRESLLIPPSNQRKRLV

Nucleotide


Download         Length: 1440 bp        

>NTDB_id=809485 P5S46_RS18670 WP_039040474.1 4018628..4020067(-) (rpoN/rpoN1) [Aeromonas caviae strain AC1520]
ATGAAGCCGACATTACAGTTGCGTCTCGGTCAGTCCCTGACCATGACGCCACAATTACAACAAGCGATTCGTCTGCTCCA
GCTCTCCACCCTGGAACTCCAGCAGGAAATTCAGCAAGCGCTCGACAACAACCCCTTGCTGGAGCAAGAGGAGAACGAGG
CGCAGGAAACCAGTCAGACAGAGACACAGGACGCCAGTCAACTCGACTCCAGCGATGCCATGGCCCAGGAGAGCATGCCG
GATGAACTGCCGGTGGACACCACCTGGGACGAGGTCTACTCGGCCGGTACGGCCCAGAGCGCAGGCCCCATCCATGACGG
GGAAGACAGCGTCTATCAGGGGGAGACCACAGAAAACTTGCAGGACTACCTGCTGTGGCAGATGCGGCTCACCCCGTTCA
GTGATGTGGATGCTGCCATCGCACTTGCCATCATCGATGCCATCGACGAATCCGGGTATCTGACTGCCACCCTCGAGGAT
ATTCAGGCTGCAGTCAGCAGCGAGGAGGTAGAAGTCGAACTGGATGAGATCGAAGCCGTGCTCAAGCGGGTGCAGCATTT
CGATCCGGTCGGCATCGCCGCCCGTTCGGTGCAAGAGTGTCTGCTGATCCAGCTCGGCCAGTATTCGCCGGACCTGCCCT
GGCTCGACGAAGCCAGAGAGGTGATCCGCGAACACATGGACCTGCTCGGCAATCGCGACTACCGCACCCTGGCTCGCAAG
ACCCGCCTCAAGGAGAGCGATCTCAAGGAGGTGCTGGATCTCATCCAGCAACTGGAGCCCAGACCCGGCAACGGCATCAT
CCAGAGTGAATCCCAGTACGTGATCCCGGATGTGTCCGTGGTCAAGAAGGGCAGCAAGTGGGTGGTTGAACTCAATCCGG
ACTCTGCTCCGCGCATCCGTGTCAACGAGGCCTATGCGGCCATGGCACGCAATGCTCGCAGCAGCACGGATACCCAGTTC
ATCCGTTCCCATTTGCAGGAGGCCAAGTGGTTCATCAAGAGCCTGGAGAGTCGTAACGACACCCTGCTCAAGGTGGCCAG
CTGCATCGTCGAGCAGCAGCAGGGCTTTTTCGAGTACGGCGAAGAGGCCATGAAACCCATGGTACTCAACGACATCGCCG
AAGCGGTGGAGATGCATGAGTCGACCATTTCACGGGTCACGACCCAGAAGTACATGCATACGCCCCGCGGCATTTTTGAA
CTGAAGTTTTTTTTCTCCAGTCACGTCAATACGGAAGGAGGAGGAGAGTGCTCATCGACCGCTATTCGCGCCCTGATCAA
GAAGCTGGTGACGGCGGAAAACCCCGCCAAGCCGCTTAGTGATAGCAAGATCGCGGATTTGCTGGCCGAACAGGGTATTA
TGGTGGCGAGACGCACGATCGCAAAGTACCGTGAATCCTTGTTGATCCCGCCATCCAATCAGCGCAAACGCCTGGTTTAG

Domains

Predicted by InterproScan.

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-48)

Sigma-54, DNA binding domain (Sigma54_DBD)

(319-477)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(116-305)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

45.472

100

0.482