Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   P5S46_RS00555 Genome accession   NZ_CP120942
Coordinates   118907..120424 (-) Length   505 a.a.
NCBI ID   WP_052815775.1    Uniprot ID   A0A2L0TRT9
Organism   Aeromonas caviae strain AC1520     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 113907..125424
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P5S46_RS00530 (P5S46_00530) - 115034..115669 (-) 636 WP_161469582.1 nicotinamidase -
  P5S46_RS00535 (P5S46_00535) - 115744..116394 (+) 651 WP_029314880.1 DNA mismatch repair protein MutT -
  P5S46_RS00540 (P5S46_00540) - 116471..116977 (+) 507 WP_277856481.1 DUF523 domain-containing protein -
  P5S46_RS00545 (P5S46_00545) - 116902..117867 (-) 966 WP_277856482.1 acyltransferase -
  P5S46_RS00550 (P5S46_00550) - 117875..118774 (-) 900 WP_039039683.1 acyltransferase -
  P5S46_RS00555 (P5S46_00555) comM 118907..120424 (-) 1518 WP_052815775.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  P5S46_RS00560 (P5S46_00560) ilvG 120809..122455 (+) 1647 WP_039039681.1 acetolactate synthase 2 catalytic subunit -
  P5S46_RS00565 (P5S46_00565) ilvM 122452..122709 (+) 258 WP_010676086.1 acetolactate synthase 2 small subunit -
  P5S46_RS00570 (P5S46_00570) - 122722..123666 (+) 945 WP_039039680.1 branched-chain amino acid transaminase -

Sequence

Protein


Download         Length: 505 a.a.        Molecular weight: 54674.58 Da        Isoelectric Point: 7.4701

>NTDB_id=809461 P5S46_RS00555 WP_052815775.1 118907..120424(-) (comM) [Aeromonas caviae strain AC1520]
MSLAVVYSRASLGIAAPQVTVEVHLSNGLPAFNMVGLPETSVKESRDRVRSALLNGNFEFPAKHITVNLAPADLPKEGGR
FDLAIAIGILAASKQIPAKYLLDHEFLGELALTGEIRPVLGVLPSVLACRDAGRTLLVPRENGPEASLIQDAEVRTAHQL
LAVTAWLAGQYELPLPEPQSAETLPDVPDLQDVIGQSQAKRALEIAAAGSHNLLFIGPPGTGKSMLASRLPGILPPLSEQ
EAQQTAAIHSIGGLTPRAGHWHHRPYRTPHHSASAVALVGGGTHPRPGEISLAHNGVLFLDELPEFERKVLDSLREPLET
GHITISRAARQVDFPARFQLVGAMNPSPCGHYGDGQTRSSPDQILRYLGKLSGPFLDRFDLTVEVPLLPRGSLTGKAERG
ESSQQIRERVLGARERMLSRSGKLNNLLDSREIEDVCRLSPQDAEFLEGAIQKLGLSIRAWHRILRVSRTIADLAGHATI
ERAHLIEALGYRAMDRLLSRLRGGQ

Nucleotide


Download         Length: 1518 bp        

>NTDB_id=809461 P5S46_RS00555 WP_052815775.1 118907..120424(-) (comM) [Aeromonas caviae strain AC1520]
ATGTCATTAGCTGTTGTTTATAGCCGTGCCAGCCTGGGGATAGCGGCGCCGCAAGTCACGGTGGAGGTGCACCTCTCCAA
CGGCCTGCCCGCCTTCAACATGGTGGGGTTGCCGGAAACCTCGGTGAAAGAGTCGCGGGATCGGGTGCGCAGCGCCCTGC
TCAACGGCAATTTCGAATTTCCGGCCAAGCACATCACGGTCAACCTGGCCCCTGCGGATCTGCCCAAAGAGGGGGGCCGC
TTCGACCTGGCCATCGCTATCGGCATTCTCGCCGCATCCAAGCAGATACCCGCAAAATACCTGCTCGATCACGAATTTTT
AGGGGAATTGGCCCTGACGGGCGAGATCCGCCCCGTGCTTGGGGTGCTCCCCTCGGTGCTCGCCTGCCGCGACGCAGGGC
GCACCCTGCTGGTCCCACGGGAGAACGGTCCGGAGGCTTCCCTCATACAGGATGCCGAGGTGCGCACCGCCCACCAGCTG
CTGGCGGTCACCGCCTGGCTGGCGGGCCAGTACGAACTGCCGCTGCCGGAACCCCAGAGCGCGGAGACCCTGCCCGACGT
GCCGGATCTGCAGGATGTGATCGGTCAGTCCCAGGCGAAGCGGGCGCTGGAGATCGCCGCAGCTGGCAGCCACAACCTGC
TGTTCATCGGCCCCCCCGGCACCGGCAAGAGCATGTTGGCCAGCCGTCTGCCCGGCATTCTGCCACCGCTGAGCGAACAG
GAGGCGCAGCAGACCGCCGCCATCCACTCCATCGGCGGCCTCACCCCCCGCGCCGGCCACTGGCACCACAGGCCGTATCG
CACGCCCCATCACAGCGCCTCGGCGGTGGCGCTGGTGGGCGGGGGTACCCATCCCAGGCCTGGCGAAATTTCCCTTGCCC
ACAACGGGGTCCTGTTTCTGGATGAACTGCCGGAGTTCGAGCGCAAGGTGCTCGACTCCCTTCGCGAGCCGCTGGAGACC
GGGCACATTACCATCAGTCGTGCCGCCCGCCAGGTGGATTTCCCCGCCCGCTTCCAGCTGGTGGGTGCCATGAATCCCAG
CCCCTGCGGCCATTATGGCGACGGCCAGACCCGCTCCAGCCCGGATCAGATTCTGCGCTATCTGGGCAAGCTCTCCGGCC
CCTTTCTCGACCGGTTCGATCTGACGGTAGAGGTCCCGCTCTTGCCCAGGGGGAGCCTGACCGGCAAGGCGGAGCGGGGG
GAATCGAGCCAGCAGATACGCGAACGGGTGCTGGGGGCGCGAGAGCGCATGCTGAGTCGCAGCGGAAAACTCAATAACCT
GCTGGATAGTCGTGAAATCGAAGATGTTTGCAGATTATCGCCACAGGATGCCGAGTTTCTGGAAGGTGCCATCCAGAAGC
TGGGGCTCAGCATCCGGGCCTGGCACCGCATCCTGCGGGTATCGCGCACCATCGCCGATCTGGCGGGGCACGCCACCATC
GAGAGAGCGCATCTGATCGAAGCCCTGGGCTATCGTGCCATGGATAGGCTGTTGTCGCGGCTGCGCGGGGGCCAGTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-389)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2L0TRT9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

63.944

99.406

0.636
  comM Haemophilus influenzae Rd KW20

61.858

100

0.62
  comM Vibrio campbellii strain DS40M4

62.151

99.406

0.618
  comM Glaesserella parasuis strain SC1401

60.827

100

0.612
  comM Legionella pneumophila str. Paris

50.992

99.802

0.509
  comM Legionella pneumophila strain ERS1305867

50.992

99.802

0.509
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.972

100

0.463