Detailed information    

insolico Bioinformatically predicted

Overview

Name   recC   Type   Machinery gene
Locus tag   HT079_RS01085 Genome accession   NZ_AP023067
Coordinates   225007..228213 (+) Length   1068 a.a.
NCBI ID   WP_172762257.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain TUM19853     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 220007..233213
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HT079_RS01065 (TUM19853C_02120) ccoO 221023..221634 (+) 612 WP_002212596.1 cytochrome-c oxidase, cbb3-type subunit II -
  HT079_RS01070 (TUM19853C_02130) - 221639..221809 (+) 171 WP_003693747.1 CcoQ/FixQ family Cbb3-type cytochrome c oxidase assembly chaperone -
  HT079_RS01075 (TUM19853C_02140) ccoP 221833..223152 (+) 1320 WP_003695664.1 cytochrome-c oxidase, cbb3-type subunit III -
  HT079_RS01080 (TUM19853C_02150) - 223497..224906 (+) 1410 WP_172760432.1 PepSY domain-containing protein -
  HT079_RS01085 (TUM19853C_02160) recC 225007..228213 (+) 3207 WP_172762257.1 exodeoxyribonuclease V subunit gamma Machinery gene
  HT079_RS01090 (TUM19853C_02170) mtrF 228283..229851 (-) 1569 WP_003693758.1 AbgT family antimetabolite efflux transporter MtrF -
  HT079_RS01095 (TUM19853C_02180) - 230183..230395 (+) 213 WP_010358853.1 hypothetical protein -
  HT079_RS01100 (TUM19853C_02190) mtrR 230488..231120 (-) 633 WP_003695674.1 multidrug efflux system transcriptional repressor MtrR -
  HT079_RS01105 (TUM19853C_02200) mtrC 231371..232609 (+) 1239 WP_003697358.1 multidrug efflux RND transporter periplasmic adaptor subunit MtrC -

Sequence

Protein


Download         Length: 1068 a.a.        Molecular weight: 120180.90 Da        Isoelectric Point: 4.9178

>NTDB_id=80915 HT079_RS01085 WP_172762257.1 225007..228213(+) (recC) [Neisseria gonorrhoeae strain TUM19853]
MFYLYQSNRLESLAALFARIQKVKPLKSVLQPEQIVVQSQGMRRYLNTCLARDLGVAANLAFSLPAGLTWKLMKKLIPGI
PELSPFAPEVMRWRLLDLFRSAEFQNGAEFEDVRNVLQDYLGSGESADYQLAGQLADIFDQYLVYRPQWIDAWQQGRILG
LGDDEIWQSKLWRYLDDGRQSAPHRVALWEKLLAALDKDKLPERYFVFGISTMAPMYLQLLHKLSEHCDVFVFALNPSGM
HWGNVIEAAQILKGGGDPDLTQAGHPLLASLGKQGRDFFDFLNEMEIEEETPVFEEGGRDTLLHALQTDIQNLKMPSETV
GSVNTGDGSIRIVSAHSPLRELQILKDKLLKILHEHPDWQPHDIAVLTPNIEPYTPFIEAVFGQAQPGAQALPYSVSDVK
ISRRQPLFHALSCLFDLLESRFEVDKVLVLLETAPVLRRFGLTGDDLPLLHDMVADLNIRWGLDGEMRGGTDQLFTWKQA
ADRMVLGWMLPEGGNPMWQDVSAWYADVNQTAMFGRFAAFLETLSDIARIWRQPATVGEWVARCRDLLETLFQAGPDDQK
AVQNLENEWVKWQEESTLAGFFGQLPQQTVIRHIRRFLDSESEAGFLRGGITFCSMVPMRSLPFKVICLLGLNDGDFPRN
TKAAVFDLVAKHPAKGDRARRDDDRYLFLEALISAREILYLSYIGRDIRKDEELAPSSLLGELIDTVAAMTGTNSRQLAQ
NWIEQHPLQAFSRRYFQEGGRSDGIFGTRTDYAAALGQTPEPPRPFFDQPVENAEPVAEIGQDEFIRFWRNPVKVWLQQL
AWSEPHIGEAWEPAEPFEPQHAEQIAETYIGARREGQDFSQTAARIAAESLLPSGELGKLWQQCLQTAAKQIDTAVLNSP
KLPPFPYAIPSDGQILKGSLGNLYRCGQVFYAYGKPNAPQRVAFLLEHLIFCAVMPSEAETRQTFIVQSGETEVLAEIAQ
DRALQLLSEWMAFFNIGQNRPLPFFAKTSLAAAEAFAQKQDWEAALKKARTAYYGSKVSKGQKDYTEVALVFGNASQNPL
EQPLFENLARLLADTLAAAEKREGTGAA

Nucleotide


Download         Length: 3207 bp        

>NTDB_id=80915 HT079_RS01085 WP_172762257.1 225007..228213(+) (recC) [Neisseria gonorrhoeae strain TUM19853]
ATGTTTTACCTGTACCAATCCAACCGCCTCGAATCGCTCGCTGCACTGTTTGCCCGCATTCAAAAAGTCAAACCGCTGAA
ATCTGTCTTGCAGCCCGAACAGATTGTTGTGCAGAGCCAGGGGATGCGCCGCTACCTCAACACCTGCCTCGCCCGCGATT
TGGGCGTGGCGGCGAATTTGGCGTTCAGCCTGCCCGCCGGCCTGACGTGGAAGTTGATGAAAAAACTGATTCCCGGTATT
CCGGAACTCAGCCCGTTTGCACCCGAAGTCATGCGCTGGCGGCTGCTGGATTTGTTCCGCAGCGCAGAATTTCAAAACGG
AGCGGAATTTGAAGATGTGAGGAATGTGCTGCAAGACTATCTGGGCAGCGGAGAATCGGCGGATTACCAGCTTGCGGGAC
AGCTTGCAGACATATTCGACCAATACCTCGTGTACCGTCCTCAGTGGATAGACGCTTGGCAGCAGGGCAGGATACTCGGT
TTGGGCGACGACGAAATCTGGCAGTCCAAACTGTGGCGTTACCTCGACGACGGCAGGCAGAGCGCGCCGCACCGTGTCGC
GTTGTGGGAAAAACTGCTTGCCGCGTTGGACAAGGATAAGCTGCCCGAGCGTTATTTCGTGTTCGGCATTTCCACGATGG
CACCGATGTATTTGCAGCTTTTGCACAAGCTGTCCGAACATTGCGACGTGTTCGTGTTCGCACTCAATCCGAGCGGGATG
CATTGGGGCAACGTCATCGAAGCGGCGCAAATCCTCAAAGGCGGCGGCGATCCCGATCTGACGCAGGCAGGGCATCCGCT
GCTTGCCTCATTGGGCAAGCAGGGGCGCGACTTTTTCGACTTTTTGAACGAAATGGAAATAGAAGAAGAAACGCCGGTAT
TTGAAGAAGGCGGGCGCGATACGCTTTTGCACGCCCTGCAAACCGATATTCAAAACCTGAAAATGCCGTCTGAAACGGTG
GGAAGCGTCAACACGGGCGACGGCTCGATACGCATCGTCTCCGCACACAGCCCTTTGCGCGAATTGCAGATACTCAAAGA
CAAGCTGTTGAAAATTCTGCATGAACATCCCGATTGGCAGCCGCATGATATCGCCGTATTAACCCCGAATATCGAACCCT
ATACGCCTTTTATCGAAGCCGTGTTCGGACAGGCGCAACCCGGCGCGCAGGCATTGCCGTATTCCGTTTCGGACGTGAAA
ATCAGCCGCCGGCAACCGCTGTTTCATGCTTTGTCATGCCTGTTCGACTTGTTGGAAAGCCGATTTGAAGTCGACAAAGT
GCTTGTGCTTTTAGAAACCGCGCCCGTGTTGCGCCGTTTCGGACTGACCGGGGACGATTTACCGCTTTTGCACGACATGG
TTGCCGATTTGAACATCCGCTGGGGTTTGGACGGAGAAATGCGCGGCGGCACGGATCAGCTGTTTACCTGGAAGCAGGCG
GCAGACCGTATGGTATTGGGCTGGATGCTGCCCGAAGGCGGCAACCCGATGTGGCAGGATGTCAGCGCGTGGTATGCCGA
CGTGAATCAAACCGCCATGTTCGGACGTTTTGCCGCCTTCCTCGAAACCCTGTCGGATATTGCCCGGATATGGCGGCAAC
CTGCGACGGTCGGCGAATGGGTGGCGCGTTGCCGGGATTTGCTTGAAACATTGTTTCAAGCCGGGCCCGATGACCAAAAG
GCAGTCCAAAACCTCGAAAACGAATGGGTCAAATGGCAGGAAGAGAGCACTTTGGCTGGGTTTTTCGGACAGTTGCCGCA
ACAAACCGTCATCCGCCATATCCGACGTTTCCTCGACAGCGAAAGCGAGGCAGGCTTTTTACGCGGCGGCATCACCTTTT
GCAGTATGGTGCCGATGCGGAGCCTGCCCTTTAAAGTCATCTGCCTGTTGGGTTTGAACGACGGAGATTTTCCCCGCAAT
ACCAAAGCCGCCGTATTCGACCTGGTTGCCAAACATCCCGCCAAAGGCGACCGCGCCCGCCGCGACGACGACCGCTACCT
GTTCCTCGAAGCCCTCATCAGCGCGCGCGAAATCCTGTATTTGTCCTACATCGGGCGCGACATCCGCAAAGACGAAGAGC
TTGCCCCGTCTTCCCTGTTGGGCGAACTCATCGACACAGTTGCCGCCATGACCGGCACAAACAGCCGCCAACTTGCACAA
AATTGGATAGAACAGCATCCGCTGCAAGCCTTCTCGCGCCGATATTTCCAAGAAGGCGGACGTTCAGACGGCATATTCGG
CACGCGTACCGACTACGCCGCCGCGCTCGGACAAACGCCCGAACCGCCGCGCCCTTTTTTCGACCAACCCGTAGAAAACG
CCGAACCCGTTGCCGAAATCGGACAGGACGAATTTATCCGCTTCTGGCGCAACCCCGTCAAAGTATGGCTGCAGCAGCTT
GCGTGGAGCGAACCCCATATCGGCGAAGCCTGGGAGCCTGCCGAACCCTTCGAGCCGCAACACGCGGAGCAAATCGCCGA
AACCTATATCGGGGCGCGCCGCGAAGGACAAGATTTTTCCCAAACCGCCGCCCGTATCGCGGCGGAAAGCCTGCTGCCTT
CCGGAGAATTGGGAAAACTTTGGCAGCAGTGCTTGCAAACCGCCGCCAAACAAATCGACACGGCGGTTTTAAACAGCCCC
AAACTGCCCCCGTTCCCATACGCCATACCGTCGGACGGGCAAATCCTGAAAGGCAGCTTGGGCAATCTGTACCGCTGCGG
TCAGGTGTTTTACGCCTACGGCAAACCCAATGCGCCGCAACGTGTGGCTTTTTTGTTGGAACACCTGATATTTTGCGCCG
TTATGCCGTCTGAAGCCGAAACGCGGCAAACCTTTATCGTCCAATCCGGAGAAACAGAAGTATTGGCGGAAATCGCGCAA
GACAGGGCATTGCAGCTGTTGTCGGAATGGATGGCGTTTTTCAATATCGGGCAAAACCGCCCGCTGCCGTTTTTTGCCAA
AACCTCGCTTGCCGCCGCCGAAGCGTTTGCCCAAAAACAAGATTGGGAAGCCGCCCTGAAAAAAGCCCGAACCGCCTATT
ACGGCAGCAAAGTCAGCAAAGGGCAGAAAGACTATACCGAAGTCGCCCTCGTGTTCGGCAACGCAAGCCAAAACCCGCTC
GAACAGCCCCTGTTTGAAAACCTCGCCCGCCTGCTCGCCGACACGCTTGCCGCAGCGGAAAAGAGGGAAGGGACCGGAGC
AGCATAA

Domains

Predicted by InterproScan.

Exodeoxyribonuclease V, gamma subunit (Exonuc_V_gamma)

(2-312)

RecC C-terminal domain (RecC_C)

(778-996)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recC Neisseria gonorrhoeae strain FA1090

98.034

100

0.98

Multiple sequence alignment