Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD/cglD   Type   Machinery gene
Locus tag   RMP64_RS00800 Genome accession   NZ_CP135093
Coordinates   128293..128697 (+) Length   134 a.a.
NCBI ID   WP_087013850.1    Uniprot ID   -
Organism   Streptococcus suis strain 1652329     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 123293..133697
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RMP64_RS00775 (RMP64_00775) - 124694..125059 (+) 366 WP_002936568.1 DUF1033 family protein -
  RMP64_RS00780 (RMP64_00780) - 125094..126044 (-) 951 WP_024394700.1 S66 peptidase family protein -
  RMP64_RS00785 (RMP64_00785) comGA 126130..127080 (+) 951 WP_014637312.1 competence type IV pilus ATPase ComGA Machinery gene
  RMP64_RS00790 (RMP64_00790) comGB 126992..128029 (+) 1038 WP_043032925.1 competence type IV pilus assembly protein ComGB Machinery gene
  RMP64_RS00795 (RMP64_00795) comGC 128031..128312 (+) 282 WP_011921720.1 competence type IV pilus major pilin ComGC Machinery gene
  RMP64_RS00800 (RMP64_00800) comGD/cglD 128293..128697 (+) 405 WP_087013850.1 competence type IV pilus minor pilin ComGD Machinery gene
  RMP64_RS00805 (RMP64_00805) comGE 128669..128962 (+) 294 WP_024394703.1 competence type IV pilus minor pilin ComGE Machinery gene
  RMP64_RS00810 (RMP64_00810) comGF/cglF 128949..129383 (+) 435 WP_029750050.1 competence type IV pilus minor pilin ComGF Machinery gene
  RMP64_RS00815 (RMP64_00815) comGG 129361..129771 (+) 411 WP_024394705.1 competence type IV pilus minor pilin ComGG -
  RMP64_RS00820 (RMP64_00820) comGH 129828..130781 (+) 954 WP_024394706.1 class I SAM-dependent methyltransferase Machinery gene
  RMP64_RS00825 (RMP64_00825) - 130831..132018 (+) 1188 WP_014637319.1 acetate kinase -
  RMP64_RS00830 (RMP64_00830) - 132333..132884 (+) 552 WP_014636756.1 folate family ECF transporter S component -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15246.42 Da        Isoelectric Point: 9.7552

>NTDB_id=809092 RMP64_RS00800 WP_087013850.1 128293..128697(+) (comGD/cglD) [Streptococcus suis strain 1652329]
MLRRKNKAFTLFESLLTLFVVSFLAVSLSGTVQTVFRSVQEEIFLWEFEAIYKDSQKLAASHQSVSLTIGEQEVANGRQA
VQVPRNVEVLEGKTITFEEDGGNSSLTKIRFRLSRKTVTYQLYIGSGRYKKTEE

Nucleotide


Download         Length: 405 bp        

>NTDB_id=809092 RMP64_RS00800 WP_087013850.1 128293..128697(+) (comGD/cglD) [Streptococcus suis strain 1652329]
ATGCTACGGCGAAAAAATAAGGCTTTTACCCTGTTTGAAAGCCTGCTGACCTTGTTTGTTGTCAGTTTTTTAGCTGTTTC
CCTATCAGGAACAGTACAAACGGTCTTTCGGTCTGTTCAGGAAGAAATTTTTCTCTGGGAATTTGAGGCCATCTATAAAG
ACAGTCAGAAATTGGCTGCTTCTCACCAGTCAGTTAGCTTGACTATCGGCGAACAAGAAGTGGCAAATGGTCGTCAGGCA
GTTCAGGTACCCAGAAATGTAGAAGTATTAGAGGGGAAGACCATCACATTTGAAGAAGATGGTGGAAATTCTTCTCTGAC
CAAGATACGCTTTCGGCTTAGTCGAAAGACAGTCACGTATCAATTATATATAGGGAGTGGTCGCTATAAGAAAACAGAAG
AATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Streptococcus mutans UA140

47.287

96.269

0.455
  comGD Streptococcus mutans UA159

47.287

96.269

0.455
  comGD/cglD Streptococcus pneumoniae R6

47.287

96.269

0.455
  comGD/cglD Streptococcus pneumoniae TIGR4

47.287

96.269

0.455
  comGD/cglD Streptococcus pneumoniae D39

47.287

96.269

0.455
  comGD/cglD Streptococcus pneumoniae Rx1

47.287

96.269

0.455
  comGD/cglD Streptococcus mitis NCTC 12261

46.512

96.269

0.448
  comGD/cglD Streptococcus mitis SK321

46.512

96.269

0.448
  comGD Streptococcus gordonii str. Challis substr. CH1

46.457

94.776

0.44
  comGD Lactococcus lactis subsp. cremoris KW2

40.152

98.507

0.396