Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   RMQ61_RS06245 Genome accession   NZ_CP135090
Coordinates   1250964..1252700 (-) Length   578 a.a.
NCBI ID   WP_313926161.1    Uniprot ID   -
Organism   Streptococcus suis strain ID48908     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1245964..1257700
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RMQ61_RS06230 (RMQ61_06235) - 1246708..1247994 (-) 1287 WP_313926159.1 homoserine dehydrogenase -
  RMQ61_RS06235 (RMQ61_06240) - 1248099..1249022 (+) 924 WP_024406306.1 polysaccharide deacetylase family protein -
  RMQ61_RS06240 (RMQ61_06245) rcrQ 1249147..1250955 (-) 1809 WP_313926160.1 ABC transporter ATP-binding protein Regulator
  RMQ61_RS06245 (RMQ61_06250) rcrP 1250964..1252700 (-) 1737 WP_313926161.1 ABC transporter ATP-binding protein Regulator
  RMQ61_RS06250 (RMQ61_06255) - 1252776..1253018 (-) 243 WP_012028079.1 KH domain-containing protein -
  RMQ61_RS06255 (RMQ61_06260) rpsP 1253040..1253312 (-) 273 WP_002940682.1 30S ribosomal protein S16 -
  RMQ61_RS06260 (RMQ61_06265) - 1253436..1253744 (-) 309 WP_029171816.1 DUF4298 domain-containing protein -
  RMQ61_RS06265 (RMQ61_06270) pcp 1253744..1254391 (-) 648 WP_024411282.1 pyroglutamyl-peptidase I -
  RMQ61_RS06270 (RMQ61_06275) - 1254388..1255143 (-) 756 WP_024413953.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 578 a.a.        Molecular weight: 65154.45 Da        Isoelectric Point: 5.1991

>NTDB_id=809036 RMQ61_RS06245 WP_313926161.1 1250964..1252700(-) (rcrP) [Streptococcus suis strain ID48908]
MNLIWTYLKKYPKWIALDLVGAFLFVVVNLGLPTFLARMIDQGITKNDVSQLYFWAGMMGLIVLLGIVGRVTLAYAAGKL
TTNIVKDIRNDLYEKIQDYSHHEYEQIGVSSLVARMTNDAFVLMQFSEMVLKLGIITPLMMIASVIMTLVTSPSLAWTVA
VAMPFLVFVIFYVATKTRPLSEKQQKRLDTINQYVRENLMGLRVIRAFTREEFQEERFESVNEEYTDISKKLFNLTGLTE
PLFVQIIIAMIVAIVWFALEPLRTGSLQIGDLVAFIEYSFHALFSFLLFANLFNMYPRMSVSSQRIQEVLDMPISISKNE
DGITETDTRGYLEFENVTFAYPGETESPVLHNISFKAKPGETIAFIGSTGSGKSSLVNLIPRFYDVTLGRILVDGVDVRR
YNLKALRSKIGFIPQKALLFTGTIAENLKYGKMDASLAELHDATDVAQAKEFIESKEEKFDTHLAEGGSNLSGGQKQRLS
IARAIVKQPDIYIFDDSFSALDYKTDAILRARLKEVTENATVLIVAQRVGTIMDADQIIVLNEGEIVGRGTHNELMESNE
IYREIANSQLNRQSLTEE

Nucleotide


Download         Length: 1737 bp        

>NTDB_id=809036 RMQ61_RS06245 WP_313926161.1 1250964..1252700(-) (rcrP) [Streptococcus suis strain ID48908]
ATGAATCTGATTTGGACCTACTTAAAAAAATATCCTAAGTGGATTGCCTTAGACTTGGTGGGGGCCTTCTTATTTGTAGT
GGTAAACTTGGGCTTGCCGACTTTTTTGGCTAGGATGATTGACCAAGGAATTACAAAGAACGATGTTAGTCAGCTCTATT
TCTGGGCGGGGATGATGGGACTGATTGTCCTGCTCGGTATTGTTGGTCGAGTGACACTTGCCTATGCAGCTGGAAAATTG
ACGACCAATATCGTCAAAGATATTCGAAATGATCTGTATGAGAAAATTCAGGACTACTCTCATCATGAATATGAGCAGAT
TGGTGTTTCTTCTCTAGTTGCTCGTATGACAAATGATGCCTTTGTTCTCATGCAATTCTCTGAAATGGTGTTGAAACTCG
GTATTATTACACCCTTGATGATGATTGCTTCTGTCATCATGACCTTGGTAACCAGTCCGAGCTTGGCCTGGACAGTAGCA
GTAGCCATGCCTTTTCTGGTTTTTGTTATTTTCTATGTGGCAACCAAAACTCGTCCTCTTTCTGAAAAGCAACAAAAACG
TTTGGATACGATCAACCAATATGTTCGTGAAAATCTCATGGGCTTACGTGTCATTCGTGCCTTTACTCGTGAAGAGTTTC
AAGAGGAGCGCTTTGAGTCGGTCAATGAGGAATATACCGATATTTCCAAAAAACTCTTTAATCTGACTGGTCTGACAGAA
CCTCTCTTTGTCCAAATTATCATTGCTATGATTGTGGCCATTGTCTGGTTCGCTTTGGAGCCCTTGAGAACAGGTAGTCT
GCAAATCGGTGATTTGGTAGCCTTTATCGAATATAGTTTCCACGCGCTTTTCTCATTCTTGCTCTTTGCTAACTTGTTTA
ACATGTATCCACGTATGTCGGTATCGAGCCAACGGATTCAGGAAGTCTTGGACATGCCCATTTCCATTTCTAAGAATGAA
GATGGGATTACTGAAACAGATACTCGTGGTTATTTGGAATTTGAAAATGTAACCTTTGCCTATCCTGGTGAAACGGAATC
GCCTGTTCTCCACAATATTTCATTTAAGGCTAAGCCTGGTGAAACCATTGCCTTTATTGGTTCAACAGGTTCTGGCAAGT
CTTCCTTGGTCAACTTGATTCCACGTTTCTATGATGTGACACTTGGTCGTATCTTGGTGGACGGTGTGGATGTCAGACGC
TACAATCTAAAGGCACTCCGCAGCAAGATTGGCTTTATTCCGCAGAAAGCTCTGCTATTTACCGGAACTATCGCGGAAAA
CTTAAAGTACGGTAAGATGGATGCTAGTCTTGCTGAACTTCATGATGCGACAGATGTGGCTCAGGCTAAGGAGTTTATCG
AGAGTAAGGAAGAAAAATTCGACACCCATCTAGCAGAAGGCGGAAGCAACCTGTCAGGCGGGCAAAAGCAACGTTTGTCC
ATTGCGCGTGCCATTGTCAAACAGCCTGATATTTATATCTTTGATGATTCTTTCTCAGCCTTGGATTATAAGACGGATGC
CATTTTGAGAGCTCGTTTGAAGGAAGTAACGGAAAATGCGACAGTACTGATTGTTGCCCAACGTGTCGGAACCATTATGG
ATGCTGACCAGATTATCGTGCTGAACGAAGGTGAAATTGTCGGTCGTGGCACCCACAATGAATTGATGGAAAGCAATGAG
ATTTACCGAGAAATTGCCAACTCTCAACTTAACCGTCAATCGTTAACAGAAGAATAG

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(20-280)

ABC transporter (ABC_tran)

(350-497)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

38.333

100

0.398