Detailed information NTG0808998

Bioinformatically predicted

Overview

• Name: comGD
• Type: Machinery gene
• Locus tag: RMQ61_RS00845
• Genome accession: NZ_CP135090
• Coordinates: 136757..137164 (+)
• Length: 135 a.a.
• NCBI ID: WP_313920910.1
• Uniprot ID: -
• Organism: Streptococcus suis strain ID48908
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 131757..142164

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RMQ61_RS00815 (RMQ61_00815)	-	132351..132719 (+)	369	WP_313920907.1	DUF1033 family protein	-
RMQ61_RS00820 (RMQ61_00820)	tnpA	132855..133329 (-)	475	Protein_127	IS200/IS605 family transposase	-
RMQ61_RS00825 (RMQ61_00825)	-	133558..134508 (-)	951	WP_313920908.1	LD-carboxypeptidase	-
RMQ61_RS00830 (RMQ61_00830)	comGA	134594..135544 (+)	951	WP_105140681.1	competence type IV pilus ATPase ComGA	Machinery gene
RMQ61_RS00835 (RMQ61_00835)	comGB	135456..136493 (+)	1038	WP_313921433.1	competence type IV pilus assembly protein ComGB	Machinery gene
RMQ61_RS00840 (RMQ61_00840)	comGC	136495..136776 (+)	282	WP_313920909.1	competence type IV pilus major pilin ComGC	Machinery gene
RMQ61_RS00845 (RMQ61_00845)	comGD	136757..137164 (+)	408	WP_313920910.1	competence type IV pilus minor pilin ComGD	Machinery gene
RMQ61_RS00850 (RMQ61_00850)	comGE	137136..137429 (+)	294	WP_024413203.1	competence type IV pilus minor pilin ComGE	Machinery gene
RMQ61_RS00855 (RMQ61_00855)	comGF/cglF	137416..137850 (+)	435	WP_024395445.1	competence type IV pilus minor pilin ComGF	Machinery gene
RMQ61_RS00860 (RMQ61_00860)	comGG	137828..138355 (+)	528	WP_313920911.1	competence type IV pilus minor pilin ComGG	-
RMQ61_RS00865 (RMQ61_00865)	comGH	138411..139364 (+)	954	WP_105105703.1	class I SAM-dependent methyltransferase	Machinery gene
RMQ61_RS00870 (RMQ61_00870)	-	139414..140601 (+)	1188	WP_313920912.1	acetate kinase	-
RMQ61_RS00875 (RMQ61_00875)	-	140677..141540 (-)	864	WP_313926416.1	IS982 family transposase	-

Sequence

Protein

• Length: 135 a.a.
• Molecular weight: 15362.62 Da
• Isoelectric Point: 9.7340

>NTDB_id=808998 RMQ61_RS00845 WP_313920910.1 136757..137164(+) (comGD) [Streptococcus suis strain ID48908]
MLRRKNKAFTLLESLLTLFVVSFLAVSLSGTVQTVFQSVQEEIFLWEFEAIYKDSQKLAASSHQSVSLTIGKQEVTNGHQ
VVQVPRNVEVLEGKTITFEEDGGNSSLTKIRFRLRQKIVTYQLYIGSGRYKKTEE

Nucleotide

• Length: 408 bp

>NTDB_id=808998 RMQ61_RS00845 WP_313920910.1 136757..137164(+) (comGD) [Streptococcus suis strain ID48908]
ATGCTAAGGCGAAAAAATAAGGCTTTCACGCTTTTGGAAAGTCTGCTGACCTTATTTGTTGTCAGTTTTTTAGCTGTTTC
CTTATCGGGAACAGTGCAGACAGTCTTTCAGTCTGTTCAGGAAGAAATTTTTCTCTGGGAATTTGAGGCCATCTATAAAG
ACAGTCAGAAATTGGCAGCTAGTTCTCACCAGTCAGTTAGCTTGACTATCGGCAAACAAGAAGTGACAAATGGTCATCAG
GTAGTCCAGGTACCCAGAAATGTAGAAGTATTAGAAGGGAAGACCATCACATTTGAAGAAGATGGTGGAAATTCTTCTCT
GACCAAGATTCGTTTTCGGCTTAGGCAAAAAATAGTCACGTATCAATTATATATAGGGAGTGGTCGCTATAAGAAAACAG
AAGAATAA

Domains

Predicted by InterProScan.

• Prokaryotic N-terminal methylation motif (N_methyl) (3-28)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comGD	Streptococcus mutans UA140	47.287	95.556	0.452
comGD	Streptococcus mutans UA159	47.287	95.556	0.452
comGD/cglD	Streptococcus pneumoniae TIGR4	46.512	95.556	0.444
comGD/cglD	Streptococcus pneumoniae R6	46.512	95.556	0.444
comGD/cglD	Streptococcus pneumoniae D39	46.512	95.556	0.444
comGD/cglD	Streptococcus pneumoniae Rx1	46.512	95.556	0.444
comGD	Streptococcus gordonii str. Challis substr. CH1	47.244	94.074	0.444
comGD/cglD	Streptococcus mitis SK321	45.736	95.556	0.437
comGD/cglD	Streptococcus mitis NCTC 12261	45.736	95.556	0.437
comGD	Lactococcus lactis subsp. cremoris KW2	40.769	96.296	0.393