Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   P4831_RS09085 Genome accession   NZ_CP120842
Coordinates   1806211..1806858 (-) Length   215 a.a.
NCBI ID   WP_023189914.1    Uniprot ID   -
Organism   Lactococcus lactis strain ZFM559     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1801211..1811858
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P4831_RS09070 - 1803277..1804203 (-) 927 WP_010906107.1 peptidyl-prolyl cis-trans isomerase -
  P4831_RS09075 - 1804218..1804340 (-) 123 Protein_1767 O-methyltransferase -
  P4831_RS09080 pepF 1804343..1806148 (-) 1806 WP_277812453.1 oligoendopeptidase F Regulator
  P4831_RS09085 coiA 1806211..1806858 (-) 648 WP_023189914.1 competence protein CoiA family protein Machinery gene
  P4831_RS09090 - 1806897..1807982 (-) 1086 WP_023164440.1 YdcF family protein -
  P4831_RS09095 - 1808144..1808968 (-) 825 WP_277812454.1 alpha/beta hydrolase -
  P4831_RS09100 - 1809183..1810604 (-) 1422 WP_003130403.1 solute carrier family 23 protein -
  P4831_RS09105 - 1810911..1811747 (+) 837 WP_003130402.1 Cof-type HAD-IIB family hydrolase -

Sequence

Protein


Download         Length: 215 a.a.        Molecular weight: 26190.60 Da        Isoelectric Point: 9.6868

>NTDB_id=808781 P4831_RS09085 WP_023189914.1 1806211..1806858(-) (coiA) [Lactococcus lactis strain ZFM559]
MKRLKERTENYQVHGFTVLWLMGENLWLKDQITNLQKNLVYFSENRGFYYWELDFKTQKLRLKTLIHEDLSGKIIYLQEE
IPFGQGRLIEQLRLPFLSQKLLTIPLIVDLKLAEFIRRQLYYCSPKWLKLQEKYYQRGENLLNLTFERSFIAPLGLNLLE
VFDDEIPLHKFTQIKQNINLYYENFLINFQQNSFKAVYPPRFYVIMKKQKKDMNE

Nucleotide


Download         Length: 648 bp        

>NTDB_id=808781 P4831_RS09085 WP_023189914.1 1806211..1806858(-) (coiA) [Lactococcus lactis strain ZFM559]
ATGAAACGTTTAAAAGAACGGACAGAAAATTATCAAGTACACGGTTTTACGGTGCTTTGGCTTATGGGGGAAAATTTATG
GTTAAAAGACCAAATAACAAACCTTCAAAAAAATTTAGTCTATTTTTCAGAAAATAGAGGTTTCTATTATTGGGAATTAG
ATTTTAAAACTCAGAAGCTGAGATTGAAGACACTGATTCATGAAGATTTGAGTGGGAAAATTATTTATTTACAAGAAGAA
ATCCCTTTTGGGCAAGGACGACTTATTGAGCAATTACGACTGCCTTTTTTATCACAAAAGTTACTGACAATACCACTTAT
TGTTGATCTTAAACTAGCGGAATTTATTCGTCGGCAACTTTATTATTGTTCACCAAAATGGTTGAAACTTCAGGAAAAAT
ATTACCAAAGAGGTGAAAATTTGTTGAATTTGACTTTTGAACGTTCTTTTATTGCGCCTTTGGGGTTGAACTTACTTGAA
GTTTTTGATGATGAAATCCCTTTACATAAATTTACTCAAATTAAGCAGAATATTAATCTCTATTATGAAAACTTTTTAAT
AAATTTTCAGCAAAATAGCTTTAAGGCAGTCTATCCTCCCCGTTTCTATGTTATAATGAAAAAGCAGAAGAAGGATATGA
ATGAATGA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(3-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Lactococcus lactis subsp. cremoris KW2

71.226

98.605

0.702
  coiA Streptococcus mitis NCTC 12261

43.961

96.279

0.423
  coiA Streptococcus pneumoniae TIGR4

42.995

96.279

0.414
  coiA Streptococcus pneumoniae Rx1

42.995

96.279

0.414
  coiA Streptococcus pneumoniae D39

42.995

96.279

0.414
  coiA Streptococcus pneumoniae R6

42.995

96.279

0.414