Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   RPQ07_RS25215 Genome accession   NZ_CP135086
Coordinates   5629344..5631077 (-) Length   577 a.a.
NCBI ID   WP_313946458.1    Uniprot ID   -
Organism   Streptomyces sp. AM8-1-1     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 5624344..5636077
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RPQ07_RS25205 (RPQ07_25205) - 5626116..5627378 (+) 1263 WP_313946456.1 RNA polymerase sigma factor -
  RPQ07_RS25210 (RPQ07_25210) rcrQ 5627416..5629347 (-) 1932 WP_313946457.1 ABC transporter ATP-binding protein Regulator
  RPQ07_RS25215 (RPQ07_25215) rcrP 5629344..5631077 (-) 1734 WP_313946458.1 ABC transporter ATP-binding protein Regulator
  RPQ07_RS25220 (RPQ07_25220) - 5631169..5632614 (-) 1446 WP_313946459.1 FGGY family carbohydrate kinase -
  RPQ07_RS25225 (RPQ07_25225) - 5632651..5632950 (-) 300 WP_313946460.1 YtxH domain-containing protein -
  RPQ07_RS25245 (RPQ07_25245) - 5633643..5633792 (-) 150 WP_313946461.1 hypothetical protein -
  RPQ07_RS25250 (RPQ07_25250) - 5634047..5635609 (-) 1563 WP_313946462.1 FG-GAP-like repeat-containing protein -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62279.31 Da        Isoelectric Point: 5.8738

>NTDB_id=808780 RPQ07_RS25215 WP_313946458.1 5629344..5631077(-) (rcrP) [Streptomyces sp. AM8-1-1]
MLIRLLRTHLSPYTRPIALLVALQLLQTSATLYLPTLNADIIDNGVVKGDTGYILRLGALMIGISLVQVVCNIGAVYYGA
RTASALGRDVRAAVFDRVQSFSAREVGRFGAPSLITRTTNDVQQVQMLVLMAFTLMVSAPIMCVGGIVLALGQDVTLSTV
LLAVVPVLGIAVSLIVKKMRPLFRTMQERLDTVNRVLREQITGNRVIRAFVRDGYEKDRFRGANTELTDVSLATGRLMAL
MFPTVLTVVNVSSVAVVWFGAHRVDSGAIQIGALTAFLAYLMQIVMAVMMATFMFMMVPRAEVCAERIDEVLATESSVVP
PAAPVRQLHRRGYLEVRGAEFRYPGAEEPVLRDVSLSARPGETTAIIGSTGSGKSTLLGLVPRLFDATGGEVLVDGVDVR
ELEPALMARTVGLVPQKPFLFSGTVATNLRYGRPDASDEDLWQALEVAQAAGFVRELEGGLDAPIAQGGTNVSGGQRQRL
AIARTLVQRPEIYLFDDSFSALDYATDAALRSALTLETSEATVVIVAQRVSTIRDADRIVVLDEGQVVGAGTHRELMAGN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=808780 RPQ07_RS25215 WP_313946458.1 5629344..5631077(-) (rcrP) [Streptomyces sp. AM8-1-1]
GTGCTGATACGACTGCTGCGGACCCATCTGAGTCCGTACACACGACCCATCGCCCTGCTGGTGGCGCTGCAGTTGCTGCA
GACCAGCGCCACTCTGTATCTGCCCACCCTGAACGCCGACATCATCGACAACGGTGTCGTGAAGGGTGACACGGGCTACA
TTCTGCGGCTCGGCGCGCTCATGATCGGCATCAGCCTCGTGCAGGTCGTCTGCAACATCGGTGCCGTCTACTACGGGGCG
CGGACCGCTTCCGCCCTCGGACGGGACGTGCGGGCGGCCGTCTTCGACCGTGTGCAGAGCTTCTCGGCCCGCGAGGTCGG
GCGCTTCGGGGCACCGTCGCTGATCACCCGGACGACCAACGACGTCCAGCAGGTGCAGATGCTGGTCCTGATGGCGTTCA
CCCTGATGGTGTCGGCCCCCATCATGTGCGTCGGCGGCATCGTGCTGGCTCTCGGCCAGGACGTGACCCTGTCCACGGTG
CTGCTGGCGGTGGTGCCGGTGCTCGGCATCGCCGTGTCCCTGATCGTCAAGAAGATGCGGCCCCTGTTCCGGACCATGCA
GGAGCGGCTGGACACGGTGAACCGGGTGCTGCGGGAGCAGATCACCGGCAACCGCGTGATCCGCGCCTTCGTCCGGGACG
GCTACGAGAAGGACCGCTTCCGCGGGGCGAACACGGAGCTGACCGATGTGTCCCTGGCCACCGGCCGGCTGATGGCCTTG
ATGTTCCCGACCGTGCTGACGGTCGTGAACGTCTCGTCCGTCGCCGTGGTCTGGTTCGGTGCGCACCGCGTCGACAGCGG
TGCCATCCAGATCGGCGCGCTGACCGCGTTCCTCGCCTATCTCATGCAGATCGTGATGGCCGTGATGATGGCCACCTTCA
TGTTCATGATGGTGCCGCGCGCCGAGGTCTGTGCCGAGCGGATCGACGAGGTCCTGGCGACGGAGTCGAGCGTGGTGCCG
CCCGCCGCGCCGGTGCGGCAGCTGCACCGGCGGGGGTATCTGGAGGTACGCGGCGCCGAGTTCCGCTACCCCGGGGCCGA
GGAGCCGGTGCTGCGTGATGTCTCGCTGTCGGCGCGGCCGGGCGAGACGACCGCGATCATCGGCTCCACCGGCAGCGGGA
AGTCGACGCTGCTCGGTCTGGTGCCGCGGCTGTTCGACGCGACCGGCGGCGAGGTGCTCGTCGACGGGGTGGACGTCCGC
GAACTCGAACCGGCGCTGATGGCCCGGACCGTGGGGCTCGTGCCGCAGAAGCCGTTCCTCTTCTCCGGCACGGTGGCGAC
GAACCTGCGGTACGGGAGGCCCGACGCGAGCGACGAGGACCTGTGGCAGGCGCTGGAGGTGGCGCAGGCCGCCGGCTTCG
TGCGCGAACTGGAGGGCGGGCTCGACGCGCCGATCGCACAGGGCGGCACGAACGTCTCCGGCGGTCAGCGCCAGCGGCTC
GCGATCGCCCGGACGCTGGTGCAGCGCCCGGAGATCTATCTGTTCGACGACTCGTTCTCGGCGCTGGACTACGCGACCGA
CGCGGCGCTGCGGTCCGCGCTGACACTCGAGACCTCGGAGGCCACGGTCGTCATCGTCGCCCAGCGGGTGTCCACCATCC
GTGACGCGGACCGGATCGTGGTCCTGGACGAGGGGCAGGTCGTGGGGGCGGGAACCCACCGCGAGCTGATGGCGGGGAAC
GAGACCTACCGGGAGATCGTGCTCTCGCAGCTGACGGAGGCTGAAGCCGCATGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(351-498)

ABC transporter transmembrane region (ABC_membrane)

(19-288)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

41.348

95.147

0.393