Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   TSUB_RS16200 Genome accession   NZ_AP023054
Coordinates   3599163..3600689 (-) Length   508 a.a.
NCBI ID   WP_087023609.1    Uniprot ID   -
Organism   Thaumasiovibrio subtropicus strain C4V358     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3594163..3605689
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  TSUB_RS16175 ccoG 3594465..3595895 (+) 1431 WP_087023599.1 cytochrome c oxidase accessory protein CcoG -
  TSUB_RS16180 - 3596080..3597060 (+) 981 WP_087023601.1 serine/threonine protein kinase -
  TSUB_RS16185 - 3597108..3597710 (+) 603 WP_192867866.1 thiol:disulfide interchange protein DsbA/DsbL -
  TSUB_RS16190 - 3597794..3598255 (+) 462 WP_087023605.1 DUF523 domain-containing protein -
  TSUB_RS16195 - 3598204..3599112 (-) 909 WP_087023607.1 acyltransferase -
  TSUB_RS16200 comM 3599163..3600689 (-) 1527 WP_087023609.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  TSUB_RS16205 ilvG 3601102..3602748 (+) 1647 WP_087023611.1 acetolactate synthase 2 catalytic subunit -
  TSUB_RS16210 ilvM 3602750..3603034 (+) 285 WP_087023613.1 acetolactate synthase 2 small subunit -
  TSUB_RS16215 ilvE 3603046..3603990 (+) 945 WP_087023615.1 branched-chain-amino-acid transaminase -

Sequence

Protein


Download         Length: 508 a.a.        Molecular weight: 54452.51 Da        Isoelectric Point: 7.5545

>NTDB_id=80855 TSUB_RS16200 WP_087023609.1 3599163..3600689(-) (comM) [Thaumasiovibrio subtropicus strain C4V358]
MSLAIVHSRASVGVSAPAVTVEVHISNGMPAFQLVGLPETTVKEAKDRVRSAIINANFEFPSRRITVNLAPADLPKEGGR
FDLPIALGILAASAQIPDTLLAECEFVGELALSGELRGVKGVLPAAVAVKQAKRTLVVPHCNAGQAALVGSEFHKSAVSL
LEVCGYLSGQQALTLQSPVIEQAQAAASGRDLQDIIGQQQGKRSLEIAAAGGHNLLFMGPPGTGKTMLASRLCDLLPTMT
IEEAMETASVASLTQQDIHEGNWRNRPFRAPHHSSSMAALVGGGSTPRPGEISLAHNGVLFLDEMPEFERKVLDSLREPL
ESGEIVISRATQKTTFPARFQLLGALNPSPTGYYEGSQTRTNPQVILRYLSRLSGPLLDRFDMSLEIPLLPQGTLANGGD
RGEPTQVVKARVYRAREIMLARAGKVNALLSNRELDRDCALQAGDAAFLESALHQLGLSIRAYHRIIKVARTIADLQGEA
EIHRSHLAEALGYRAMDRLLKQLTAQAV

Nucleotide


Download         Length: 1527 bp        

>NTDB_id=80855 TSUB_RS16200 WP_087023609.1 3599163..3600689(-) (comM) [Thaumasiovibrio subtropicus strain C4V358]
ATGTCATTAGCCATTGTGCATAGCCGCGCGAGTGTGGGAGTCAGTGCGCCTGCCGTGACGGTTGAAGTGCATATCAGTAA
TGGTATGCCTGCTTTTCAACTTGTTGGATTGCCTGAGACGACGGTGAAAGAAGCGAAAGATCGCGTACGCAGTGCGATCA
TTAACGCGAACTTTGAGTTTCCCTCAAGGCGAATCACGGTCAATCTCGCCCCTGCGGACCTCCCCAAAGAGGGAGGGCGT
TTTGATCTTCCTATCGCACTTGGTATTCTCGCTGCATCGGCACAAATCCCAGATACGCTATTGGCAGAATGTGAATTTGT
CGGTGAGTTGGCACTCTCTGGAGAGTTGCGTGGTGTGAAAGGCGTATTACCTGCTGCGGTCGCGGTGAAACAAGCGAAGC
GCACCTTGGTTGTTCCCCATTGCAATGCAGGGCAAGCGGCGTTAGTCGGTAGTGAGTTCCATAAGTCGGCAGTGAGTTTG
CTTGAAGTGTGTGGCTACCTGTCGGGACAACAGGCGCTGACGCTGCAGTCACCAGTGATTGAGCAGGCGCAAGCCGCAGC
ATCAGGGCGCGACTTACAGGATATTATTGGTCAGCAACAAGGTAAGCGCAGTTTAGAAATTGCCGCGGCTGGTGGCCATA
ATTTACTGTTTATGGGGCCGCCCGGCACAGGTAAAACGATGCTGGCCTCACGCCTTTGCGATTTATTGCCCACCATGACC
ATTGAGGAAGCGATGGAGACGGCGTCCGTCGCGTCTTTGACCCAACAAGATATCCATGAAGGCAACTGGCGGAATCGACC
TTTTCGAGCCCCTCATCACTCCTCGTCGATGGCAGCACTGGTGGGAGGGGGTTCGACACCTCGCCCCGGAGAAATTTCAT
TGGCGCATAACGGTGTGCTTTTTTTAGACGAAATGCCCGAATTTGAACGGAAAGTGTTGGATTCATTACGTGAGCCGCTG
GAATCTGGCGAGATCGTGATCTCTCGGGCGACGCAAAAAACCACCTTTCCAGCACGCTTTCAACTCCTTGGTGCCCTCAA
TCCAAGTCCGACAGGCTACTATGAAGGCAGTCAAACCCGTACTAATCCACAGGTGATCTTACGTTATTTGAGTCGCCTCT
CAGGGCCCTTACTCGATCGCTTTGATATGTCATTAGAAATACCGCTATTACCACAAGGAACATTAGCGAATGGCGGCGAC
CGCGGCGAGCCGACTCAGGTCGTGAAAGCGCGTGTGTATCGTGCCCGAGAGATCATGCTGGCACGTGCGGGGAAAGTGAA
TGCGTTGTTGTCAAATCGCGAGCTTGACCGAGATTGTGCCTTACAAGCCGGTGATGCAGCCTTTCTTGAGAGCGCGCTGC
ATCAGTTAGGGTTATCAATTCGCGCCTATCACCGTATTATTAAAGTGGCGCGCACGATTGCCGATTTACAAGGTGAGGCA
GAGATTCATCGCAGTCATCTCGCTGAAGCACTCGGCTATCGAGCCATGGACAGATTGCTCAAACAGCTCACCGCGCAGGC
CGTGTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(191-392)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(403-494)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

79.412

100

0.797
  comM Vibrio campbellii strain DS40M4

78.782

100

0.789
  comM Haemophilus influenzae Rd KW20

65.089

99.803

0.65
  comM Glaesserella parasuis strain SC1401

62.84

100

0.636
  comM Legionella pneumophila str. Paris

50

98.031

0.49
  comM Legionella pneumophila strain ERS1305867

50

98.031

0.49
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.436

100

0.425

Multiple sequence alignment