Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   TSUB_RS04960 Genome accession   NZ_AP023054
Coordinates   1042929..1043228 (+) Length   99 a.a.
NCBI ID   WP_087019895.1    Uniprot ID   -
Organism   Thaumasiovibrio subtropicus strain C4V358     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1037929..1048228
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  TSUB_RS04950 hupB 1040358..1040630 (+) 273 WP_087019902.1 nucleoid-associated protein HU-beta -
  TSUB_RS04955 ppiD 1040875..1042722 (+) 1848 WP_087019898.1 peptidylprolyl isomerase -
  TSUB_RS04960 comEA/comE1 1042929..1043228 (+) 300 WP_087019895.1 ComEA family DNA-binding protein Machinery gene
  TSUB_RS04965 queC 1043336..1044022 (-) 687 WP_087019892.1 7-cyano-7-deazaguanine synthase QueC -
  TSUB_RS04970 - 1044076..1045122 (-) 1047 WP_087019888.1 PLP-dependent cysteine synthase family protein -
  TSUB_RS04975 - 1045251..1045709 (+) 459 WP_087019980.1 Lrp/AsnC family transcriptional regulator -
  TSUB_RS04980 tesB 1045719..1046591 (-) 873 WP_087019885.1 acyl-CoA thioesterase II -
  TSUB_RS04985 - 1046734..1047153 (+) 420 WP_087019881.1 YbaY family lipoprotein -
  TSUB_RS04990 - 1047136..1047453 (-) 318 WP_087019977.1 MGMT family protein -

Sequence

Protein


Download         Length: 99 a.a.        Molecular weight: 10860.52 Da        Isoelectric Point: 4.4929

>NTDB_id=80843 TSUB_RS04960 WP_087019895.1 1042929..1043228(+) (comEA/comE1) [Thaumasiovibrio subtropicus strain C4V358]
MKKYGLLGVIFALFFTTMPVAFAEEQTATSDEFEIVVNINTATLEELDKLLIGIGPDKAQAIIDYRNEHGAFLSADELQK
VKGIGKSTVAKNAERILVE

Nucleotide


Download         Length: 300 bp        

>NTDB_id=80843 TSUB_RS04960 WP_087019895.1 1042929..1043228(+) (comEA/comE1) [Thaumasiovibrio subtropicus strain C4V358]
ATGAAAAAGTATGGTCTACTTGGTGTCATCTTCGCGTTGTTTTTCACAACAATGCCTGTGGCTTTTGCTGAGGAACAAAC
CGCGACAAGCGATGAATTTGAGATTGTCGTCAATATTAATACCGCAACACTCGAAGAACTCGACAAGTTGTTGATTGGCA
TTGGGCCTGACAAAGCACAGGCTATTATTGACTATCGCAATGAGCATGGTGCCTTTCTCAGTGCCGACGAACTACAGAAA
GTAAAAGGAATTGGTAAATCGACAGTCGCGAAAAATGCCGAACGTATCCTAGTGGAGTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(35-96)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

41.379

100

0.485
  comEA Vibrio cholerae C6706

47

100

0.475
  comEA Vibrio cholerae strain A1552

47

100

0.475
  comEA Vibrio parahaemolyticus RIMD 2210633

48.936

94.949

0.465
  comEA Vibrio campbellii strain DS40M4

54.217

83.838

0.455

Multiple sequence alignment