Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   P7C00_RS31300 Genome accession   NZ_CP120724
Coordinates   6975140..6976633 (+) Length   497 a.a.
NCBI ID   WP_404937894.1    Uniprot ID   -
Organism   Pseudomonas sp. JDS08PS003     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6970140..6981633
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P7C00_RS31270 (P7C00_31160) - 6970684..6971388 (+) 705 WP_346633372.1 HAD family hydrolase -
  P7C00_RS31275 (P7C00_31165) sutA 6971513..6971836 (-) 324 WP_123726805.1 transcriptional regulator SutA -
  P7C00_RS31280 (P7C00_31170) - 6971939..6972364 (-) 426 WP_123726806.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  P7C00_RS31285 (P7C00_31175) - 6972574..6973911 (-) 1338 WP_346633373.1 ammonium transporter -
  P7C00_RS31290 (P7C00_31180) glnK 6973945..6974283 (-) 339 WP_002555808.1 P-II family nitrogen regulator -
  P7C00_RS31295 (P7C00_31185) - 6974700..6974960 (+) 261 WP_346633374.1 accessory factor UbiK family protein -
  P7C00_RS31300 (P7C00_31190) comM 6975140..6976633 (+) 1494 WP_404937894.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  P7C00_RS31305 (P7C00_31195) - 6976638..6977852 (-) 1215 WP_404937895.1 aldose 1-epimerase family protein -
  P7C00_RS31310 (P7C00_31200) - 6977964..6978542 (-) 579 WP_404937896.1 TetR/AcrR family transcriptional regulator -
  P7C00_RS31315 (P7C00_31205) - 6978656..6979582 (+) 927 WP_346633398.1 ABC transporter six-transmembrane domain-containing protein -
  P7C00_RS31320 (P7C00_31210) - 6979586..6979771 (-) 186 WP_404937897.1 hypothetical protein -
  P7C00_RS31325 (P7C00_31215) - 6979749..6980555 (-) 807 WP_404937898.1 Ca2+-dependent phosphoinositide-specific phospholipase C -

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 53360.23 Da        Isoelectric Point: 7.9363

>NTDB_id=808423 P7C00_RS31300 WP_404937894.1 6975140..6976633(+) (comM) [Pseudomonas sp. JDS08PS003]
MSLAIIHSRAQVGVQAPAVSVEVHLANGLPSLTLVGLPEAAVKESKDRVRSAILNAGFNFPSRRITLNLAPADLPKDGGR
FDLAIALGILAASVQVPALALDNIECLGELALSGEVRAVRGVLPAALAARKAGHTLLVPRANAEEACLASGLEVIAVDHL
LEAVAHFNGHAPLPPYVSDGLQENHSPYPDLREVQGQLAAKRALLIAAAGAHNLLFSGPPGTGKTLLASRLPGLLPPLQE
EEALEVAAIQSVSSHKPLRHWPQRPFRQPHHSASGPALVGGGSKPQPGEITLAHHGVLFLDELPEFDRKVLEVLREPMES
GQIVIARARDRVQFPARFQLVAAMNPCPCGYLGDPSGRCRCTPEQIQRYRNKLSGPLLDRIDLHLTVAREATTLNPEPQP
GDDSASAAARVALARELQQQRQGCANAHLDLPGLRRHCRLSTADERWLEAACERLGLSLRAAHRLLKVARTLADLEQAAR
INREHLAEALHYRPSTN

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=808423 P7C00_RS31300 WP_404937894.1 6975140..6976633(+) (comM) [Pseudomonas sp. JDS08PS003]
ATGTCCCTGGCAATCATCCACAGCCGTGCCCAAGTGGGCGTACAGGCTCCGGCTGTCAGCGTTGAAGTGCACCTGGCCAA
CGGCCTACCGAGCCTGACCCTGGTCGGGCTGCCGGAAGCCGCAGTCAAGGAAAGCAAGGACCGGGTGCGCAGCGCCATTC
TCAACGCCGGATTCAATTTCCCGTCTCGACGCATCACCCTCAACCTGGCTCCGGCGGACTTGCCCAAGGATGGTGGACGA
TTCGACCTGGCCATCGCCCTGGGCATCCTCGCCGCCAGCGTGCAGGTGCCGGCCCTGGCACTGGACAACATCGAATGCCT
GGGTGAGCTGGCCTTGTCCGGCGAGGTGCGAGCGGTGCGCGGTGTGCTCCCGGCCGCGCTGGCGGCACGCAAGGCTGGAC
ACACCCTGCTGGTGCCCCGTGCCAATGCCGAGGAAGCCTGCCTGGCCTCGGGCCTTGAGGTGATCGCCGTAGACCATCTG
CTGGAGGCCGTCGCCCACTTCAATGGTCACGCCCCCCTCCCGCCTTACGTCAGCGACGGTTTGCAGGAAAATCACTCGCC
CTACCCCGACCTGCGGGAAGTCCAGGGTCAACTGGCCGCCAAGCGTGCCCTTCTGATCGCTGCCGCCGGCGCCCACAATC
TGCTGTTCAGCGGCCCGCCCGGCACCGGCAAGACCTTGCTGGCCAGTCGCTTGCCCGGCCTGCTACCACCCTTGCAGGAA
GAAGAAGCCCTGGAAGTCGCGGCCATTCAATCGGTGAGCAGCCACAAGCCGCTGCGCCACTGGCCCCAGCGCCCCTTCCG
CCAACCCCATCATTCGGCATCAGGCCCTGCGCTGGTGGGGGGCGGCTCGAAACCACAACCGGGAGAAATCACCCTGGCCC
ATCACGGCGTGTTGTTTCTCGATGAATTGCCGGAGTTCGACCGCAAGGTCCTGGAGGTTCTGCGCGAGCCCATGGAGTCG
GGCCAGATCGTCATCGCCCGCGCTCGCGACCGGGTGCAGTTCCCGGCGCGCTTCCAACTGGTAGCCGCCATGAACCCCTG
CCCCTGTGGCTACCTTGGCGATCCCAGCGGACGATGCCGCTGCACGCCGGAACAGATCCAGCGCTATCGCAACAAGCTGT
CCGGCCCGTTGCTGGATCGCATCGACCTGCACCTGACCGTGGCCCGCGAAGCCACCACCCTGAACCCCGAGCCGCAACCG
GGAGACGACAGCGCCAGCGCCGCCGCCCGAGTGGCTCTAGCTCGCGAGCTGCAACAACAACGCCAGGGCTGCGCCAATGC
CCATCTCGACCTCCCCGGCCTACGGCGCCATTGCCGTTTATCCACGGCAGACGAACGCTGGCTGGAAGCGGCCTGCGAAC
GCCTGGGCCTATCGCTACGAGCCGCCCACCGCCTGCTGAAGGTGGCCCGGACCCTGGCCGACCTCGAGCAGGCGGCACGA
ATCAACCGCGAGCATCTGGCAGAAGCCCTGCACTATCGGCCGAGCACGAATTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-390)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-493)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

56.364

99.598

0.561
  comM Vibrio cholerae strain A1552

55.758

99.598

0.555
  comM Haemophilus influenzae Rd KW20

54.691

100

0.551
  comM Glaesserella parasuis strain SC1401

54.8

100

0.551
  comM Legionella pneumophila str. Paris

50.501

100

0.507
  comM Legionella pneumophila strain ERS1305867

50.501

100

0.507
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.328

100

0.459