Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   P6988_RS04630 Genome accession   NZ_CP120719
Coordinates   964725..965273 (+) Length   182 a.a.
NCBI ID   WP_006958299.1    Uniprot ID   A0A097QHM9
Organism   Vibrio coralliilyticus strain Rb102     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 959725..970273
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P6988_RS04615 (P6988_04615) uvrA 959843..962665 (-) 2823 WP_277684686.1 excinuclease ABC subunit UvrA -
  P6988_RS04620 (P6988_04620) galU 962805..963677 (-) 873 WP_006958301.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  P6988_RS04625 (P6988_04625) qstR 963795..964442 (-) 648 WP_277684687.1 LuxR C-terminal-related transcriptional regulator Regulator
  P6988_RS04630 (P6988_04630) ssb 964725..965273 (+) 549 WP_006958299.1 single-stranded DNA-binding protein Machinery gene
  P6988_RS04635 (P6988_04635) csrD 965421..967436 (+) 2016 WP_277684688.1 RNase E specificity factor CsrD -
  P6988_RS04640 (P6988_04640) - 967433..968872 (+) 1440 WP_277684689.1 MSHA biogenesis protein MshI -
  P6988_RS04645 (P6988_04645) gspM 968872..969522 (+) 651 WP_277684690.1 type II secretion system protein GspM -
  P6988_RS04650 (P6988_04650) - 969515..969838 (+) 324 WP_171341606.1 MSHA biogenesis protein MshK -

Sequence

Protein


Download         Length: 182 a.a.        Molecular weight: 20140.20 Da        Isoelectric Point: 4.9269

>NTDB_id=808299 P6988_RS04630 WP_006958299.1 964725..965273(+) (ssb) [Vibrio coralliilyticus strain Rb102]
MASRGVNKVILVGNLGSDPEVRYMPSGGAVANITIATSESWRDKATGEQREKTEWHRVSLFGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQNGQDRYSTEVVVQGFNGVMQMLGGRAQGGAPGQSMGQPQQQGGWGQPQQPAMQQSQPAQAQQPYSQPQ
QQNQNQPQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 549 bp        

>NTDB_id=808299 P6988_RS04630 WP_006958299.1 964725..965273(+) (ssb) [Vibrio coralliilyticus strain Rb102]
ATGGCGAGCCGTGGAGTCAACAAAGTTATTTTAGTCGGTAATCTGGGATCAGATCCGGAAGTACGTTATATGCCAAGCGG
TGGCGCCGTAGCAAACATCACGATTGCGACGTCTGAAAGCTGGCGTGATAAAGCAACAGGCGAGCAGCGCGAAAAAACAG
AATGGCACCGTGTGTCTCTGTTTGGCAAGCTGGCTGAAGTTGCGGGTGAGTACTTGCGCAAAGGTTCTCAGGTTTATATC
GAAGGTCAACTACAGACCCGCAAATGGCAAGACCAGAACGGTCAGGACCGTTATAGCACTGAAGTTGTGGTTCAAGGGTT
CAATGGTGTTATGCAGATGCTAGGTGGTCGTGCTCAAGGCGGCGCACCGGGTCAATCGATGGGTCAACCTCAGCAGCAAG
GTGGTTGGGGCCAACCTCAGCAGCCAGCAATGCAACAAAGCCAACCTGCTCAGGCTCAGCAACCTTACTCTCAGCCTCAA
CAGCAGAACCAAAATCAGCCTCAGTATAATGAGCCACCGATGGATTTTGATGACGATATCCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A097QHM9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

80.978

100

0.819
  ssb Glaesserella parasuis strain SC1401

55.44

100

0.588
  ssb Neisseria meningitidis MC58

44.865

100

0.456
  ssb Neisseria gonorrhoeae MS11

45.604

100

0.456