Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   P6988_RS04625 Genome accession   NZ_CP120719
Coordinates   963795..964442 (-) Length   215 a.a.
NCBI ID   WP_277684687.1    Uniprot ID   -
Organism   Vibrio coralliilyticus strain Rb102     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 958795..969442
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P6988_RS04615 (P6988_04615) uvrA 959843..962665 (-) 2823 WP_277684686.1 excinuclease ABC subunit UvrA -
  P6988_RS04620 (P6988_04620) galU 962805..963677 (-) 873 WP_006958301.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  P6988_RS04625 (P6988_04625) qstR 963795..964442 (-) 648 WP_277684687.1 LuxR C-terminal-related transcriptional regulator Regulator
  P6988_RS04630 (P6988_04630) ssb 964725..965273 (+) 549 WP_006958299.1 single-stranded DNA-binding protein Machinery gene
  P6988_RS04635 (P6988_04635) csrD 965421..967436 (+) 2016 WP_277684688.1 RNase E specificity factor CsrD -
  P6988_RS04640 (P6988_04640) - 967433..968872 (+) 1440 WP_277684689.1 MSHA biogenesis protein MshI -

Sequence

Protein


Download         Length: 215 a.a.        Molecular weight: 25016.00 Da        Isoelectric Point: 8.4798

>NTDB_id=808298 P6988_RS04625 WP_277684687.1 963795..964442(-) (qstR) [Vibrio coralliilyticus strain Rb102]
MTKNIYTRTIYFLCEDSSKNNHFIHQVEKQLGIDIPHIEPNELMLAMQQHKHKILMIDHDNYKKLNNQIRDLPLSNKMFE
TIIFNVEKRLTTEELLCFGNLKGLFYQDDSVEAIAKGCGEIINSQNWLPRKVAAQLLHYYRHVVLSQTAPATVDLTSREI
QILRCLKTGASNMQIAEDLFISEFTVKSHLYQIFKKLSVKNRVQAIAWANQHMLS

Nucleotide


Download         Length: 648 bp        

>NTDB_id=808298 P6988_RS04625 WP_277684687.1 963795..964442(-) (qstR) [Vibrio coralliilyticus strain Rb102]
ATGACTAAAAACATCTACACCAGAACCATATACTTCCTCTGTGAAGACAGCTCCAAAAACAACCACTTTATTCACCAAGT
CGAGAAACAGCTTGGCATTGATATTCCCCATATTGAGCCGAACGAGCTGATGCTTGCCATGCAACAACATAAGCATAAGA
TTCTCATGATTGATCATGACAACTACAAAAAGCTTAATAATCAAATCCGTGACTTGCCTCTATCGAACAAAATGTTTGAA
ACCATAATCTTTAATGTAGAAAAAAGACTTACTACAGAAGAGCTACTGTGCTTTGGCAATTTGAAAGGACTGTTTTATCA
AGATGACTCCGTTGAAGCCATCGCTAAAGGATGTGGTGAGATAATCAACAGTCAAAACTGGTTGCCCCGTAAAGTCGCAG
CTCAGCTACTGCATTACTATCGTCATGTTGTGCTTAGCCAGACTGCCCCTGCAACTGTGGATTTAACCTCACGTGAAATT
CAGATTCTACGCTGTTTAAAAACTGGAGCGTCCAATATGCAAATCGCAGAGGATCTGTTTATTAGTGAGTTTACCGTTAA
GTCCCACCTTTATCAGATCTTCAAAAAGCTTTCCGTTAAGAATCGTGTCCAAGCCATTGCTTGGGCTAATCAACATATGC
TGTCTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(155-209)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio cholerae strain A1552

60.28

99.535

0.6
  qstR Vibrio campbellii strain DS40M4

58.986

100

0.595
  qstR Vibrio parahaemolyticus RIMD 2210633

57.407

100

0.577