Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   P6988_RS02655 Genome accession   NZ_CP120719
Coordinates   561688..563211 (-) Length   507 a.a.
NCBI ID   WP_277684559.1    Uniprot ID   -
Organism   Vibrio coralliilyticus strain Rb102     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 556688..568211
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P6988_RS02635 (P6988_02635) - 557909..558895 (+) 987 WP_277684557.1 serine/threonine protein kinase -
  P6988_RS02640 (P6988_02640) - 558926..559546 (+) 621 WP_006957502.1 thiol:disulfide interchange protein DsbA/DsbL -
  P6988_RS02645 (P6988_02645) - 559602..560486 (-) 885 WP_277684558.1 acyltransferase -
  P6988_RS02650 (P6988_02650) - 560670..561656 (+) 987 WP_021456909.1 DUF2860 domain-containing protein -
  P6988_RS02655 (P6988_02655) comM 561688..563211 (-) 1524 WP_277684559.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  P6988_RS02660 (P6988_02660) ilvG 563716..565362 (+) 1647 WP_038514203.1 acetolactate synthase 2 catalytic subunit -
  P6988_RS02665 (P6988_02665) ilvM 565364..565648 (+) 285 WP_006957495.1 acetolactate synthase 2 small subunit -
  P6988_RS02670 (P6988_02670) ilvE 565661..566605 (+) 945 WP_019273987.1 branched-chain-amino-acid transaminase -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 55133.22 Da        Isoelectric Point: 7.8069

>NTDB_id=808293 P6988_RS02655 WP_277684559.1 561688..563211(-) (comM) [Vibrio coralliilyticus strain Rb102]
MGLAIIYSRASVGVEAPPVTVEVHISNGMPGFTLVGLPETTVKESRDRVRSAIINSRFEFPAKRITVNLAPADLPKEGGR
FDLPIALGILAASEQIPVSGLAEKEFVGELALSGELRGVKGVLPAALAANKAQRSLVVPHYNGDQAALVGEEQHKSAQSL
IEVCADLCGQQKLSLHQTRNLHRAVDNGRDLQDIIGQQQGKRALEIAAAGNHNLLFLGPPGTGKTMLASRLCDLLPEMSD
DEAMETASVASLTQQEINALNWKRRPFRAPHHSSSMAALVGGGTIPRPGEISLAHNGLLFLDEMPEFERKVLDSLREPLE
SGEIIISRAQGKTRFPARFQLVGALNPSPTGYYEGNQSRVNPQTILRYLSRLSGPLLDRFDMSLEIPALPKGTLAEGGDR
GEPTEVVKQRVLNARVCMLERSNKVNALLGSREIEEYCPLKKEDAQFLESALHRLGLSIRAYHRIIKVARTIADLDGQSQ
IARNHLAEALGYRAMDRVLKQLTAQAV

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=808293 P6988_RS02655 WP_277684559.1 561688..563211(-) (comM) [Vibrio coralliilyticus strain Rb102]
ATGGGCTTAGCCATTATTTACAGTCGGGCATCGGTGGGGGTTGAAGCGCCACCTGTGACGGTAGAGGTGCATATCAGTAA
TGGAATGCCGGGGTTCACTCTGGTGGGATTACCGGAAACTACGGTCAAAGAATCACGTGACCGAGTGCGCAGTGCGATCA
TTAACTCTCGATTTGAGTTTCCAGCCAAGCGAATCACGGTCAATCTTGCACCCGCCGATCTGCCCAAGGAAGGAGGGCGC
TTTGATCTGCCGATTGCACTAGGCATTCTCGCCGCTTCAGAACAGATCCCAGTCAGCGGCTTGGCAGAAAAAGAGTTTGT
TGGTGAACTGGCTTTGTCGGGTGAGCTGCGCGGAGTGAAAGGGGTACTGCCTGCGGCGCTGGCAGCCAATAAAGCACAGC
GAAGCCTAGTGGTACCTCATTACAACGGCGATCAAGCTGCTTTAGTGGGCGAAGAACAGCATAAATCTGCCCAAAGCTTA
ATAGAAGTGTGCGCCGATCTTTGCGGCCAACAAAAGCTTAGCCTGCATCAAACACGAAATCTGCACCGAGCGGTGGATAA
TGGCCGCGACTTACAAGACATCATTGGCCAGCAGCAAGGTAAACGTGCTTTGGAGATTGCGGCGGCAGGTAACCACAACT
TGTTATTTTTAGGCCCGCCTGGGACAGGGAAAACCATGCTTGCTTCGCGTTTGTGCGATTTGCTACCGGAAATGAGTGAC
GACGAAGCAATGGAAACGGCGTCTGTTGCATCACTGACTCAGCAGGAAATCAATGCGCTTAACTGGAAGCGGCGCCCCTT
TCGTGCTCCGCACCACTCAAGTTCAATGGCCGCCCTTGTTGGTGGCGGCACGATTCCAAGGCCGGGTGAAATTTCTTTGG
CGCACAATGGGTTGCTGTTTCTTGATGAAATGCCAGAGTTTGAACGTAAGGTGCTTGACTCATTGCGTGAGCCACTGGAA
TCCGGGGAGATTATTATCTCGCGTGCTCAGGGCAAAACTCGTTTCCCTGCACGCTTTCAGCTGGTGGGCGCCCTTAACCC
GAGTCCGACGGGGTATTACGAAGGTAATCAGTCGAGAGTTAATCCACAAACCATTTTACGTTATCTGAGTCGGTTATCTG
GCCCTCTACTGGATCGTTTTGATATGTCACTTGAGATCCCAGCGTTACCTAAAGGTACTTTGGCCGAAGGGGGCGATCGT
GGTGAACCTACAGAAGTAGTTAAGCAAAGGGTTCTCAATGCCAGAGTCTGTATGCTGGAGCGCTCCAATAAGGTTAATGC
ACTGTTGGGCAGTCGCGAAATAGAGGAGTACTGTCCATTGAAAAAAGAAGATGCGCAGTTTTTGGAGAGTGCGCTGCACC
GACTTGGGTTGTCAATTCGGGCTTATCACCGAATCATTAAGGTCGCGCGCACTATTGCTGATTTAGATGGTCAGTCGCAG
ATTGCTCGCAATCACCTGGCTGAAGCGTTGGGATATCGGGCAATGGACCGAGTGCTTAAGCAATTGACCGCTCAGGCGGT
GTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-493)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

86.785

100

0.868
  comM Vibrio campbellii strain DS40M4

86.193

100

0.862
  comM Haemophilus influenzae Rd KW20

66.469

100

0.665
  comM Glaesserella parasuis strain SC1401

64.118

100

0.645
  comM Legionella pneumophila str. Paris

50.602

98.225

0.497
  comM Legionella pneumophila strain ERS1305867

50.602

98.225

0.497
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.913

100

0.43