Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   RKE30_RS28155 Genome accession   NZ_CP134875
Coordinates   6506934..6507560 (+) Length   208 a.a.
NCBI ID   WP_313747110.1    Uniprot ID   -
Organism   Streptomyces sp. Li-HN-5-11     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 6501934..6512560
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RKE30_RS28135 (RKE30_28135) - 6503232..6503888 (-) 657 WP_313747106.1 vitamin K epoxide reductase family protein -
  RKE30_RS28140 (RKE30_28140) - 6504033..6504893 (+) 861 WP_313747107.1 ABC transporter ATP-binding protein -
  RKE30_RS28145 (RKE30_28145) - 6504890..6505735 (+) 846 WP_313747108.1 ABC transporter permease -
  RKE30_RS28150 (RKE30_28150) - 6505732..6506937 (+) 1206 WP_313747109.1 sensor histidine kinase -
  RKE30_RS28155 (RKE30_28155) vraR 6506934..6507560 (+) 627 WP_313747110.1 response regulator transcription factor Regulator
  RKE30_RS28160 (RKE30_28160) hisS 6507630..6508892 (-) 1263 WP_313747111.1 histidine--tRNA ligase -
  RKE30_RS28165 (RKE30_28165) - 6508905..6509612 (-) 708 WP_313747112.1 MBL fold metallo-hydrolase -
  RKE30_RS28170 (RKE30_28170) - 6509780..6510637 (+) 858 WP_313749760.1 peptidylprolyl isomerase -
  RKE30_RS28175 (RKE30_28175) - 6510773..6512002 (+) 1230 WP_313747113.1 DUF349 domain-containing protein -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 22258.66 Da        Isoelectric Point: 5.4027

>NTDB_id=808251 RKE30_RS28155 WP_313747110.1 6506934..6507560(+) (vraR) [Streptomyces sp. Li-HN-5-11]
MIRIVLADDHPVVREGLRAMLSAEPDLEVVADASSGPQAEALAAELRPDIVLMDLRMPGGSGVDSIERMARAGLPCRVVV
LTTYETDGDILRAVEAGAAGYLLKDLPRGDLADAVRAAARGETVLAPPVAARLVDQLRTKPERPRLSERETAVLRLVAEG
CTNAEIGRRLFIGESTVKTHLLRVFGKLGVDDRTAAVTSALRHGLLEQ

Nucleotide


Download         Length: 627 bp        

>NTDB_id=808251 RKE30_RS28155 WP_313747110.1 6506934..6507560(+) (vraR) [Streptomyces sp. Li-HN-5-11]
GTGATCCGGATCGTGCTGGCCGACGACCATCCCGTGGTGCGGGAGGGACTGCGCGCGATGCTCAGCGCCGAGCCGGACCT
GGAGGTCGTCGCCGACGCCTCCAGCGGCCCGCAGGCGGAGGCCCTGGCGGCCGAGCTCAGGCCCGACATCGTGCTGATGG
ACCTGCGCATGCCGGGCGGGTCGGGCGTCGACTCGATCGAGCGCATGGCCCGGGCCGGGCTGCCGTGCCGGGTGGTCGTC
CTGACGACGTACGAGACGGACGGCGACATCCTGCGGGCCGTGGAGGCCGGCGCGGCGGGCTACCTGCTGAAGGACCTCCC
GCGCGGCGATCTGGCGGACGCGGTGCGGGCCGCCGCGCGCGGCGAGACGGTCCTGGCCCCGCCGGTCGCCGCCCGCCTGG
TGGACCAGTTGCGCACGAAGCCGGAACGCCCCCGGCTGTCCGAACGCGAGACGGCGGTGCTGCGGCTGGTGGCGGAGGGC
TGCACGAACGCGGAGATCGGCCGCCGTCTGTTCATCGGCGAGTCGACGGTGAAGACCCATCTGCTGCGGGTCTTCGGCAA
GTTGGGGGTCGACGACCGGACGGCGGCGGTGACGAGCGCGCTGCGTCACGGGCTGCTGGAGCAGTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(146-200)

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

39.13

99.519

0.389
  degU Bacillus subtilis subsp. subtilis str. 168

35.268

100

0.38