Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   P6910_RS23125 Genome accession   NZ_CP120717
Coordinates   6555782..6557290 (+) Length   502 a.a.
NCBI ID   WP_317143610.1    Uniprot ID   A0AA97IIB6
Organism   Endozoicomonas sp. 8E     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 6550782..6562290
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P6910_RS23095 (P6910_23085) - 6551164..6552414 (-) 1251 WP_317143604.1 ammonium transporter -
  P6910_RS23100 (P6910_23090) glnK 6552647..6552985 (-) 339 WP_317143605.1 P-II family nitrogen regulator -
  P6910_RS23105 (P6910_23095) - 6553251..6553715 (-) 465 WP_317143606.1 hypothetical protein -
  P6910_RS23110 (P6910_23100) - 6553833..6554096 (+) 264 WP_317143607.1 accessory factor UbiK family protein -
  P6910_RS23115 (P6910_23105) - 6554392..6554793 (+) 402 WP_317143608.1 DUF2541 family protein -
  P6910_RS23120 (P6910_23110) - 6554884..6555636 (+) 753 WP_317143609.1 hypothetical protein -
  P6910_RS23125 (P6910_23115) comM 6555782..6557290 (+) 1509 WP_317143610.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  P6910_RS23130 (P6910_23120) phnW 6557405..6558547 (-) 1143 WP_317143611.1 2-aminoethylphosphonate--pyruvate transaminase -
  P6910_RS23135 (P6910_23125) - 6558832..6559557 (+) 726 WP_317143612.1 UTRA domain-containing protein -
  P6910_RS23140 (P6910_23130) - 6559653..6560321 (+) 669 WP_317143613.1 phosphonatase-like hydrolase -
  P6910_RS23145 (P6910_23135) - 6560338..6561471 (+) 1134 WP_317143614.1 TIGR03364 family FAD-dependent oxidoreductase -
  P6910_RS23150 (P6910_23140) - 6561527..6561748 (+) 222 WP_317143615.1 hypothetical protein -

Sequence

Protein


Download         Length: 502 a.a.        Molecular weight: 54627.59 Da        Isoelectric Point: 8.1869

>NTDB_id=808251 P6910_RS23125 WP_317143610.1 6555782..6557290(+) (comM) [Endozoicomonas sp. 8E]
MSRLAVVQTRAKTGLDAPAVSVEVHLSAGLPALNMVGLPEAAVRESKDRVRSAILNSGFEFPVSRITVNLAPADLPKEGG
RFDLPIALGILAASGQLKPESLAGYEFLGELALSGALRPITGSLPASIACSQSAHTLLLPQMNAQAAALCPDARVLGAEN
LLGVCAHLTGNQHLTEAICNRNESPVDYPDLLDVRGQQQAKRGLMTAAAGAHHLIFYGPPGTGKTMLASRLPGILPEMND
QEALEVAAIHTLSSYSQPPSWKQRPFRNPHHTASAVALVGGGSQPRPGEISFAHNGVLFLDELPEFQKVALEVLREPLET
REVVISRAKGQASFPAGFQLIAAMNPCPCGYLGDPQKACQCSAEQVRRYKRKLSGPLLDRIDLQIEVSSQKTERLFENPP
EDENLSTEKIRQQVIKARSIQQRRQGKLNARLSASEMNEYCSLNKKEQDFMTRLCDKLGYSARAVHRILRVARTLADLEE
KDIQQKHLAEAVHYRKLDREPG

Nucleotide


Download         Length: 1509 bp        

>NTDB_id=808251 P6910_RS23125 WP_317143610.1 6555782..6557290(+) (comM) [Endozoicomonas sp. 8E]
ATGTCGCGGCTCGCTGTTGTTCAAACCCGCGCCAAAACCGGACTGGACGCACCTGCGGTATCGGTTGAAGTCCATTTGTC
GGCAGGTCTGCCAGCTCTGAATATGGTCGGTCTTCCGGAAGCCGCTGTTCGTGAAAGCAAAGACAGGGTAAGAAGTGCCA
TCCTCAACAGTGGCTTTGAGTTTCCGGTTTCCCGTATTACCGTGAATCTGGCACCCGCTGATCTTCCCAAAGAAGGCGGT
CGCTTTGATCTGCCTATCGCTCTGGGTATTCTGGCGGCATCGGGCCAGCTTAAACCTGAGTCTCTGGCAGGTTACGAGTT
TCTTGGTGAGCTGGCCCTGTCGGGCGCACTGAGACCGATCACCGGCTCATTGCCAGCATCCATAGCCTGCAGCCAATCGG
CTCACACACTGCTGCTGCCCCAGATGAATGCACAAGCGGCAGCCCTTTGCCCCGATGCCAGAGTGTTGGGGGCAGAAAAC
CTGCTGGGAGTCTGCGCTCATCTCACCGGTAATCAACATCTTACAGAAGCCATCTGCAACAGGAATGAATCCCCTGTCGA
TTATCCTGATCTGCTGGATGTAAGGGGGCAACAACAGGCTAAACGGGGTCTGATGACGGCCGCCGCTGGTGCTCACCATC
TGATTTTCTACGGCCCTCCGGGAACCGGCAAAACCATGCTGGCCAGTCGCCTGCCCGGGATTCTTCCCGAGATGAATGAC
CAGGAAGCTCTGGAAGTGGCCGCCATACATACTTTGTCTTCCTATAGCCAGCCCCCTTCATGGAAGCAGCGACCCTTTCG
CAACCCCCATCATACCGCTTCAGCCGTCGCCCTGGTGGGTGGAGGCAGCCAACCCCGACCAGGAGAGATTTCCTTTGCGC
ACAACGGTGTTCTGTTCCTGGATGAACTGCCGGAGTTTCAAAAGGTAGCCCTGGAAGTACTGAGAGAACCCCTGGAAACC
CGCGAAGTGGTTATTTCCCGGGCCAAAGGTCAGGCCAGCTTCCCTGCCGGCTTTCAGTTAATTGCCGCTATGAACCCCTG
CCCCTGTGGATATCTTGGCGATCCACAGAAAGCCTGCCAGTGTTCTGCAGAGCAGGTCAGGCGTTATAAACGAAAACTGT
CAGGCCCTTTACTGGATCGCATTGACTTACAGATAGAGGTCTCCAGTCAGAAAACGGAGCGACTTTTTGAAAACCCGCCT
GAAGATGAAAACCTGTCAACTGAAAAAATACGTCAGCAGGTGATTAAGGCAAGGTCTATCCAGCAGCGCAGGCAGGGGAA
ACTCAACGCCCGTTTGTCTGCCAGCGAGATGAATGAATACTGTTCACTGAATAAAAAAGAACAGGATTTCATGACCCGGC
TGTGTGACAAACTGGGTTACTCCGCCAGAGCCGTACACCGAATACTGAGAGTAGCCCGAACTCTGGCGGATCTTGAGGAA
AAAGACATTCAACAAAAACATCTTGCTGAAGCGGTGCATTACAGGAAGCTGGATCGTGAACCGGGTTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(406-495)

Subunit ChlI of Mg-chelatase (ChlI)

(22-143)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-393)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

53.507

99.402

0.532
  comM Haemophilus influenzae Rd KW20

51.961

100

0.528
  comM Vibrio campbellii strain DS40M4

52.305

99.402

0.52
  comM Glaesserella parasuis strain SC1401

51.485

100

0.518
  comM Legionella pneumophila str. Paris

49.206

100

0.494
  comM Legionella pneumophila strain ERS1305867

49.206

100

0.494
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.004

100

0.47