Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   P6910_RS06440 Genome accession   NZ_CP120717
Coordinates   1769534..1770598 (+) Length   354 a.a.
NCBI ID   WP_317145452.1    Uniprot ID   -
Organism   Endozoicomonas sp. 8E     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1764534..1775598
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P6910_RS06430 (P6910_06425) - 1765182..1766432 (+) 1251 WP_317145450.1 malic enzyme-like NAD(P)-binding protein -
  P6910_RS06435 (P6910_06430) - 1766524..1769001 (-) 2478 WP_317145451.1 penicillin-binding protein 1A -
  P6910_RS06440 (P6910_06435) comM 1769534..1770598 (+) 1065 WP_317145452.1 pilus assembly protein PilM Machinery gene
  P6910_RS06445 (P6910_06440) - 1770598..1771164 (+) 567 WP_317145453.1 PilN domain-containing protein -
  P6910_RS06450 (P6910_06445) - 1771161..1771775 (+) 615 WP_317145454.1 type 4a pilus biogenesis protein PilO -
  P6910_RS06455 (P6910_06450) - 1771775..1772302 (+) 528 WP_317145455.1 pilus assembly protein PilP -
  P6910_RS06460 (P6910_06455) pilQ 1772569..1774650 (+) 2082 WP_317145456.1 type IV pilus secretin PilQ family protein Machinery gene
  P6910_RS06465 (P6910_06460) - 1774778..1775137 (+) 360 Protein_1281 DUF29 domain-containing protein -

Sequence

Protein


Download         Length: 354 a.a.        Molecular weight: 38159.12 Da        Isoelectric Point: 4.1940

>NTDB_id=808236 P6910_RS06440 WP_317145452.1 1769534..1770598(+) (comM) [Endozoicomonas sp. 8E]
MFGLFNNKTSAVLGVDISSTSVKVLELGRGSKGYRIEAYGEEPLPPGTVVENVIQEPEAVGEAIRRAVSRSRSSVKNAAV
AVSGSAVITKTIEMDSSLSDDEMETQITVEADQYIPYALDEVAIDFEVLGLKENNPERAEVLLAACRRDNVEMREEALGL
GGLKAKVVDVEAFAMERVYELVSDMLELPEEDPVVAIVDIGASSTSISVLSNGQTIYTREQLFGGRQLTDEIQRRYGLSP
EEAEKSKREGGISDDFEPEVLEPFKEAVVQQVSRSLQFFYSSSQYNDVDAILMAGGTSSIPGLAALVQDKLGTQALLANP
FARMALSPKVDASKLTGSAPALMIACGLAMRSFD

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=808236 P6910_RS06440 WP_317145452.1 1769534..1770598(+) (comM) [Endozoicomonas sp. 8E]
GTGTTTGGGCTGTTTAATAATAAAACAAGTGCTGTCCTTGGAGTGGATATCAGTTCGACCTCAGTGAAGGTGCTCGAACT
GGGTCGTGGCAGTAAGGGCTACCGAATCGAAGCCTACGGTGAAGAACCTTTGCCACCCGGAACTGTGGTTGAAAATGTCA
TTCAGGAGCCGGAGGCCGTTGGTGAGGCCATCAGGAGAGCTGTTTCCCGCAGCCGCAGCAGTGTGAAAAATGCTGCAGTG
GCTGTTTCCGGTTCAGCTGTCATCACCAAGACCATCGAAATGGATTCCTCTCTGAGTGATGATGAGATGGAAACACAAAT
CACCGTAGAAGCCGATCAGTATATTCCGTACGCATTAGACGAAGTAGCCATTGATTTTGAAGTCCTTGGGTTGAAGGAAA
ATAATCCTGAGCGGGCTGAGGTGCTTCTTGCTGCCTGTCGTCGTGATAATGTTGAAATGCGTGAAGAGGCTCTTGGGCTT
GGTGGTCTCAAAGCCAAAGTGGTCGATGTCGAGGCATTTGCCATGGAAAGAGTCTATGAACTGGTCAGTGATATGCTGGA
GCTTCCAGAGGAAGATCCGGTGGTTGCCATTGTTGACATTGGTGCCAGCAGTACTTCCATCAGTGTGTTGAGTAATGGGC
AGACTATTTACACCCGGGAACAATTGTTTGGCGGTCGACAGCTTACTGATGAGATTCAGCGCCGCTATGGTCTCAGTCCT
GAAGAAGCGGAAAAATCCAAACGTGAAGGGGGGATTTCAGACGATTTTGAACCTGAAGTGCTGGAGCCTTTCAAAGAGGC
GGTTGTGCAGCAGGTTTCCCGATCCCTGCAGTTTTTTTATTCCTCCAGTCAATACAATGATGTGGATGCCATTTTGATGG
CCGGAGGAACATCTTCTATTCCAGGCCTTGCTGCTCTGGTTCAGGACAAGCTTGGAACACAGGCATTATTGGCCAATCCG
TTCGCCAGAATGGCGCTCTCTCCAAAAGTGGACGCCAGTAAATTAACTGGCAGCGCTCCGGCTTTGATGATCGCCTGTGG
ATTAGCCATGAGGAGTTTTGACTGA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(14-353)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Acinetobacter nosocomialis M2

53.672

100

0.537
  pilM Acinetobacter baumannii D1279779

53.39

100

0.534
  comM Acinetobacter baylyi ADP1

51.412

100

0.514
  pilM Legionella pneumophila strain ERS1305867

42.655

100

0.427