Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   P3X63_RS22635 Genome accession   NZ_CP120679
Coordinates   4407538..4408050 (-) Length   170 a.a.
NCBI ID   WP_077735876.1    Uniprot ID   -
Organism   Bacillus sp. HSf4     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4402538..4413050
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P3X63_RS22600 (P3X63_22600) - 4402884..4403360 (+) 477 WP_035428589.1 spore coat protein -
  P3X63_RS22605 (P3X63_22605) - 4403407..4403826 (-) 420 WP_077735879.1 universal stress protein -
  P3X63_RS22610 (P3X63_22610) - 4403845..4405311 (-) 1467 WP_026589468.1 SulP family inorganic anion transporter -
  P3X63_RS22615 (P3X63_22615) - 4405463..4406809 (+) 1347 WP_179115675.1 MFS transporter -
  P3X63_RS22620 (P3X63_22620) - 4406818..4407078 (-) 261 WP_277692169.1 hypothetical protein -
  P3X63_RS22625 (P3X63_22625) - 4407096..4407185 (+) 90 Protein_4411 helix-turn-helix domain-containing protein -
  P3X63_RS22630 (P3X63_22630) rpsR 4407253..4407492 (-) 240 WP_003178022.1 30S ribosomal protein S18 -
  P3X63_RS22635 (P3X63_22635) ssbA 4407538..4408050 (-) 513 WP_077735876.1 single-stranded DNA-binding protein SsbA Machinery gene
  P3X63_RS22640 (P3X63_22640) rpsF 4408097..4408384 (-) 288 WP_026589475.1 30S ribosomal protein S6 -
  P3X63_RS22645 (P3X63_22645) ychF 4408497..4409597 (-) 1101 WP_026589476.1 redox-regulated ATPase YchF -
  P3X63_RS22650 (P3X63_22650) - 4409778..4409984 (-) 207 WP_026589477.1 DUF951 domain-containing protein -
  P3X63_RS22655 (P3X63_22655) - 4410104..4411120 (-) 1017 WP_026589478.1 membrane protein -
  P3X63_RS22660 (P3X63_22660) yyaC 4411371..4411988 (+) 618 WP_026589479.1 spore protease YyaC -
  P3X63_RS22665 (P3X63_22665) - 4412032..4412880 (-) 849 WP_026589480.1 ParB/RepB/Spo0J family partition protein -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 18499.12 Da        Isoelectric Point: 4.7410

>NTDB_id=807702 P3X63_RS22635 WP_077735876.1 4407538..4408050(-) (ssbA) [Bacillus sp. HSf4]
MLNRVVLVGRLTKDPELRYTPSGAAVATFTLAVNRTFTNQQGEREADFINCVVWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVYVTEVQAESVQFLEPKGGGSGSGGYSGGQGGQYFGGGQNEPNPFGSSQNNQNRNQGNSFNDDPFANDGKP
IDISDDDLPF

Nucleotide


Download         Length: 513 bp        

>NTDB_id=807702 P3X63_RS22635 WP_077735876.1 4407538..4408050(-) (ssbA) [Bacillus sp. HSf4]
ATGCTTAACCGAGTTGTTTTAGTCGGCAGACTGACAAAGGACCCAGAGCTTCGTTATACCCCAAGCGGTGCAGCTGTTGC
GACCTTCACGCTCGCTGTGAATCGTACGTTTACGAATCAGCAGGGCGAACGTGAAGCGGATTTTATCAACTGTGTCGTTT
GGAGAAGACAAGCCGAAAACGTAGCGAATTTCCTTAAAAAAGGAAGCCTTGCAGGTGTTGACGGACGTTTGCAAACGAGG
AACTACGAAAACCAGCAGGGACAGCGTGTGTATGTCACAGAAGTTCAAGCTGAAAGTGTTCAATTCCTGGAGCCTAAAGG
CGGCGGTTCTGGTTCCGGCGGTTACAGCGGAGGCCAGGGAGGCCAATACTTTGGCGGCGGACAAAACGAACCGAATCCAT
TCGGAAGCAGTCAGAACAACCAGAATCGCAATCAAGGCAACAGCTTTAATGATGATCCATTTGCCAATGATGGAAAGCCG
ATTGACATCTCAGACGACGACTTGCCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

84.884

100

0.859
  ssb Latilactobacillus sakei subsp. sakei 23K

60.116

100

0.612
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

62.353

0.4
  ssb Glaesserella parasuis strain SC1401

36.872

100

0.388
  ssb Vibrio cholerae strain A1552

34.807

100

0.371