Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   P6S76_RS07225 Genome accession   NZ_CP120641
Coordinates   1422362..1422646 (+) Length   94 a.a.
NCBI ID   WP_003154557.1    Uniprot ID   -
Organism   Bacillus velezensis strain YL2021     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1417362..1427646
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P6S76_RS07205 - 1418605..1419513 (+) 909 WP_007409643.1 ketopantoate reductase family protein -
  P6S76_RS07210 - 1419545..1420777 (-) 1233 WP_007409644.1 aminopeptidase -
  P6S76_RS07215 - 1420878..1421012 (-) 135 WP_003154559.1 protein YkpC -
  P6S76_RS07220 mreBH 1421084..1422091 (-) 1008 WP_003154558.1 cell shape-determining protein MreBH -
  P6S76_RS07225 abrB 1422362..1422646 (+) 285 WP_003154557.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  P6S76_RS07230 - 1422819..1424123 (+) 1305 WP_007409646.1 ATP-binding protein -
  P6S76_RS07235 - 1424125..1424952 (+) 828 WP_007409647.1 gamma-glutamylcyclotransferase family protein -
  P6S76_RS07240 ktrC 1424993..1425658 (+) 666 WP_003154554.1 Ktr system potassium transporter KtrC -
  P6S76_RS07245 ade 1425807..1427540 (+) 1734 WP_007409648.1 adenine deaminase -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10584.45 Da        Isoelectric Point: 5.2271

>NTDB_id=807402 P6S76_RS07225 WP_003154557.1 1422362..1422646(+) (abrB) [Bacillus velezensis strain YL2021]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIVLKKYKPHGICLMTGEITPENQEYGNGKIILSPEGAK
MLLEEIEEALKDRS

Nucleotide


Download         Length: 285 bp        

>NTDB_id=807402 P6S76_RS07225 WP_003154557.1 1422362..1422646(+) (abrB) [Bacillus velezensis strain YL2021]
ATGAAATCAATTGGTGTAGTAAGAAAAGTAGACGAACTCGGGCGTATTGTCATGCCGATTGAATTGAGAAGAGCATTGGA
TATCGCTATTAAAGATAGTATTGAATTTTTCGTTGACGGAGACAAAATTGTCTTGAAAAAATACAAGCCGCACGGCATTT
GCTTAATGACGGGGGAAATTACTCCCGAAAATCAGGAGTACGGCAACGGCAAAATTATTTTAAGTCCTGAAGGAGCGAAA
ATGCTGCTTGAGGAAATCGAGGAAGCGTTAAAAGATAGATCATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(54-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

55.435

97.872

0.543