Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   RLE12_RS04080 Genome accession   NZ_CP134695
Coordinates   882780..883277 (+) Length   165 a.a.
NCBI ID   WP_003114685.1    Uniprot ID   A0A0H2ZGD4
Organism   Pseudomonas aeruginosa strain TJM4     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 877780..888277
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RLE12_RS04065 bfr 877789..878253 (+) 465 WP_003093668.1 bacterioferritin -
  RLE12_RS04070 uvrA 878324..881161 (-) 2838 WP_003093663.1 excinuclease ABC subunit UvrA Machinery gene
  RLE12_RS04075 - 881375..882763 (+) 1389 WP_003103910.1 MFS transporter -
  RLE12_RS04080 ssb 882780..883277 (+) 498 WP_003114685.1 single-stranded DNA-binding protein Machinery gene
  RLE12_RS04085 pchA 883365..884795 (-) 1431 WP_003114686.1 isochorismate synthase PchA -
  RLE12_RS04090 pchB 884792..885097 (-) 306 WP_003106950.1 isochorismate lyase PchB -
  RLE12_RS04095 pchC 885097..885852 (-) 756 WP_021204788.1 pyochelin biosynthesis editing thioesterase PchC -
  RLE12_RS04100 pchD 885849..887492 (-) 1644 WP_004351774.1 pyochelin biosynthesis salicyl-AMP ligase PchD -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 18557.46 Da        Isoelectric Point: 5.2781

>NTDB_id=807402 RLE12_RS04080 WP_003114685.1 882780..883277(+) (ssb) [Pseudomonas aeruginosa strain TJM4]
MARGVNKVILVGNVGGDPETRYMPNGNAVTNITLATSESWKDKQTGQQQERTEWHRVVFFGRLAEIAGEYLRKGSQVYVE
GSLRTRKWQGQDGQDRYTTEIVVDINGNMQLLGGRPSGDDSQRAPREPMQRPQQAPQQQSRPAPQQQPAPQPAQDYDSFD
DDIPF

Nucleotide


Download         Length: 498 bp        

>NTDB_id=807402 RLE12_RS04080 WP_003114685.1 882780..883277(+) (ssb) [Pseudomonas aeruginosa strain TJM4]
ATGGCCCGTGGGGTTAACAAAGTCATTCTGGTTGGTAACGTCGGTGGTGACCCGGAAACCCGCTACATGCCCAACGGCAA
TGCGGTGACCAACATCACCCTCGCCACCAGCGAGAGCTGGAAGGACAAGCAGACCGGCCAGCAACAGGAGCGCACCGAAT
GGCACCGCGTGGTGTTCTTCGGCCGCCTGGCGGAGATCGCCGGCGAGTACCTGCGCAAGGGTTCCCAGGTCTACGTCGAA
GGCAGCCTGCGCACCCGCAAGTGGCAGGGCCAGGACGGTCAGGATCGCTACACCACCGAGATCGTGGTCGACATCAACGG
CAACATGCAGTTGCTCGGCGGCCGCCCCTCCGGCGACGATTCGCAGCGCGCCCCGCGCGAGCCCATGCAGCGCCCGCAGC
AGGCCCCGCAGCAGCAGTCGCGTCCGGCCCCGCAGCAGCAACCGGCGCCGCAACCGGCCCAGGACTACGACAGCTTCGAC
GACGACATTCCGTTCTAG

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(5-111)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZGD4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

58.659

100

0.636
  ssb Glaesserella parasuis strain SC1401

52.486

100

0.576
  ssb Neisseria gonorrhoeae MS11

48.045

100

0.521
  ssb Neisseria meningitidis MC58

47.486

100

0.515