Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   P5623_RS05770 Genome accession   NZ_CP120625
Coordinates   988576..988956 (-) Length   126 a.a.
NCBI ID   WP_224559893.1    Uniprot ID   -
Organism   Bacillus altitudinis strain DSM 103869     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 983576..993956
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P5623_RS05735 (P5623_05735) - 984162..984392 (-) 231 WP_008343816.1 DUF896 domain-containing protein -
  P5623_RS05740 (P5623_05740) - 984462..985109 (-) 648 WP_025207396.1 recombinase family protein -
  P5623_RS05745 (P5623_05745) yneA 985127..985438 (-) 312 WP_007499348.1 cell division suppressor protein YneA -
  P5623_RS05750 (P5623_05750) lexA 985598..986218 (+) 621 WP_007499350.1 transcriptional repressor LexA -
  P5623_RS05755 (P5623_05755) - 986266..986709 (-) 444 WP_056703246.1 hypothetical protein -
  P5623_RS05760 (P5623_05760) - 987007..987549 (+) 543 WP_056703249.1 IseA DL-endopeptidase inhibitor family protein -
  P5623_RS05765 (P5623_05765) - 987584..988432 (-) 849 WP_008343823.1 STAS domain-containing protein -
  P5623_RS05770 (P5623_05770) nucA/comI 988576..988956 (-) 381 WP_224559893.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  P5623_RS05775 (P5623_05775) - 989184..991179 (-) 1996 Protein_1036 glycosyltransferase family 39 protein -
  P5623_RS05780 (P5623_05780) - 991326..992234 (-) 909 WP_025207394.1 trypsin-like serine protease -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 13758.38 Da        Isoelectric Point: 7.9019

>NTDB_id=807188 P5623_RS05770 WP_224559893.1 988576..988956(-) (nucA/comI) [Bacillus altitudinis strain DSM 103869]
MGALLGGFGEDRSAKGADRYDHVIQFPKERYPETGSHIQEAIRKGHSDVCTIDRNGADARRQESLKGIPTKPGFDRDEWP
MAVCLEGGKGASVQYVSPSDNRGAGSWVGHQISGYPDGKRILFIVK

Nucleotide


Download         Length: 381 bp        

>NTDB_id=807188 P5623_RS05770 WP_224559893.1 988576..988956(-) (nucA/comI) [Bacillus altitudinis strain DSM 103869]
ATGGGTGCGTTATTAGGTGGTTTTGGAGAGGATCGTTCCGCAAAAGGGGCAGATCGTTACGATCATGTGATTCAATTTCC
TAAGGAACGGTATCCTGAAACAGGCAGTCATATTCAAGAAGCTATTCGAAAAGGGCACTCAGATGTGTGTACCATTGACC
GAAATGGGGCAGATGCCCGCAGGCAAGAATCATTAAAAGGAATTCCCACAAAACCTGGTTTTGACCGTGATGAATGGCCG
ATGGCGGTGTGTCTTGAAGGAGGAAAGGGGGCGAGCGTTCAATATGTCAGTCCATCAGATAATAGAGGCGCTGGTTCATG
GGTCGGGCATCAAATCAGTGGGTATCCTGACGGGAAACGAATTTTATTTATTGTCAAATAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(29-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

58.824

94.444

0.556