Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   P5623_RS04385 Genome accession   NZ_CP120625
Coordinates   724726..725361 (-) Length   211 a.a.
NCBI ID   WP_017359733.1    Uniprot ID   A0A653S7S4
Organism   Bacillus altitudinis strain DSM 103869     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 719726..730361
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P5623_RS04365 (P5623_04365) - 720090..720794 (+) 705 WP_007500879.1 DnaD domain-containing protein -
  P5623_RS04370 (P5623_04370) nth 720812..721474 (+) 663 WP_008344602.1 endonuclease III -
  P5623_RS04375 (P5623_04375) - 721471..721980 (+) 510 WP_056704656.1 YpoC family protein -
  P5623_RS04380 (P5623_04380) - 722016..724706 (-) 2691 WP_056704654.1 PBP1A family penicillin-binding protein -
  P5623_RS04385 (P5623_04385) recU 724726..725361 (-) 636 WP_017359733.1 Holliday junction resolvase RecU Machinery gene
  P5623_RS04390 (P5623_04390) - 725408..726364 (+) 957 WP_056704653.1 DUF2515 domain-containing protein -
  P5623_RS04395 (P5623_04395) sspM 726388..726492 (-) 105 WP_017359731.1 acid-soluble spore protein SspM -
  P5623_RS04400 (P5623_04400) - 726686..726922 (+) 237 WP_008344612.1 DUF5446 family protein -
  P5623_RS04405 (P5623_04405) - 726972..727352 (+) 381 WP_235562235.1 YppE family protein -
  P5623_RS04410 (P5623_04410) - 727462..727914 (+) 453 WP_017359729.1 YppG family protein -
  P5623_RS04415 (P5623_04415) - 727936..728355 (-) 420 WP_007500867.1 Hsp20/alpha crystallin family protein -
  P5623_RS04420 (P5623_04420) - 728524..729030 (+) 507 WP_008344623.1 PTS glucose transporter subunit IIA -
  P5623_RS04425 (P5623_04425) - 729081..730199 (-) 1119 WP_025207530.1 NADH-dependent flavin oxidoreductase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24314.60 Da        Isoelectric Point: 9.6582

>NTDB_id=807187 P5623_RS04385 WP_017359733.1 724726..725361(-) (recU) [Bacillus altitudinis strain DSM 103869]
MIRYPNGKSYQPIQQIGTKKRISGESSYSNRGMTLEADLNETNQYYLVNGIAVIHKKPTPVQIVNVDYPKRSAAVIKEAY
FKQSSTTDYNGVYKGRYIDFEAKETKSTTSFPLKNFHDHQIEHMKQVEKQGGICFVIISAFGSVYYLSATDLFFFWERQQ
QNGRKSISKDELMEAGHLMTLGYSPRIDYIKVVETLHFSDDSKQHLRSKKV

Nucleotide


Download         Length: 636 bp        

>NTDB_id=807187 P5623_RS04385 WP_017359733.1 724726..725361(-) (recU) [Bacillus altitudinis strain DSM 103869]
ATGATTCGGTATCCTAACGGAAAATCGTATCAGCCCATTCAACAAATTGGGACAAAAAAAAGAATCAGCGGCGAATCATC
TTATAGTAACCGCGGGATGACGCTTGAAGCTGACTTAAATGAAACGAACCAGTACTATTTGGTCAACGGGATCGCAGTCA
TTCATAAAAAGCCTACCCCTGTTCAAATTGTCAATGTGGATTATCCAAAAAGAAGCGCTGCTGTCATTAAAGAAGCCTAT
TTTAAACAATCCTCCACAACAGACTACAACGGGGTATACAAAGGGCGTTATATCGATTTTGAAGCAAAGGAAACCAAAAG
CACCACCTCGTTTCCACTCAAAAATTTCCACGACCATCAAATTGAGCATATGAAACAGGTTGAAAAGCAAGGCGGTATTT
GTTTTGTTATTATATCCGCATTTGGTTCCGTTTATTATTTGTCCGCTACTGACCTCTTCTTCTTTTGGGAGCGGCAGCAG
CAAAACGGCCGAAAATCCATTAGCAAAGATGAATTAATGGAAGCAGGTCACCTCATGACACTTGGATATTCGCCAAGAAT
TGATTATATTAAAGTAGTGGAGACACTTCATTTTTCGGATGACAGCAAGCAACATTTACGTTCGAAAAAGGTTTAA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A653S7S4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

72.772

95.735

0.697