Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvB   Type   Machinery gene
Locus tag   RL452_RS07990 Genome accession   NZ_CP134620
Coordinates   1641231..1642235 (-) Length   334 a.a.
NCBI ID   WP_001005765.1    Uniprot ID   Q2YT89
Organism   Staphylococcus aureus strain Sa9     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1636231..1647235
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RL452_RS07975 (RL452_07965) yajC 1638763..1639023 (-) 261 WP_001160682.1 preprotein translocase subunit YajC -
  RL452_RS07980 (RL452_07970) tgt 1639042..1640181 (-) 1140 WP_001112041.1 tRNA guanosine(34) transglycosylase Tgt -
  RL452_RS07985 (RL452_07975) queA 1640204..1641229 (-) 1026 WP_001019178.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  RL452_RS07990 (RL452_07980) ruvB 1641231..1642235 (-) 1005 WP_001005765.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  RL452_RS07995 (RL452_07985) ruvA 1642267..1642869 (-) 603 WP_000271547.1 Holliday junction branch migration protein RuvA Machinery gene
  RL452_RS08000 (RL452_07990) - 1642883..1643338 (-) 456 WP_000368902.1 ACT domain-containing protein -
  RL452_RS08005 (RL452_07995) obgE 1643351..1644643 (-) 1293 WP_045157606.1 GTPase ObgE -
  RL452_RS08010 (RL452_08000) rpmA 1644866..1645150 (-) 285 WP_000916187.1 50S ribosomal protein L27 -
  RL452_RS08015 (RL452_08005) - 1645162..1645482 (-) 321 WP_000633692.1 ribosomal-processing cysteine protease Prp -
  RL452_RS08020 (RL452_08010) rplU 1645488..1645796 (-) 309 WP_000457386.1 50S ribosomal protein L21 -
  RL452_RS08025 (RL452_08015) mreD 1645963..1646493 (-) 531 WP_001259925.1 rod shape-determining protein MreD -

Sequence

Protein


Download         Length: 334 a.a.        Molecular weight: 37631.91 Da        Isoelectric Point: 5.1844

>NTDB_id=807154 RL452_RS07990 WP_001005765.1 1641231..1642235(-) (ruvB) [Staphylococcus aureus strain Sa9]
MNERMVDQSMHSEETDFELSLRPTRLRQYIGQNSIKSNLEVFIKAAKLRHEPLDHVLLFGPPGLGKTTLSNIIANEMEVN
IRTVSGPSLERPGDLAAILSGLQPGDVLFIDEIHRLSSVVEEVLYPAMEDFFLDIIIGKGDEARSIRIDLPPFTLVGATT
RAGSLTGPLRDRFGVHLRLEYYNESDLKEIIIRTAEVLGTGIDDESAIELAKRSRGTPRVANRLLKRVRDFQQVNEDEQI
YIETTKHALGLLQVDQHGLDYIDHKMMNCIIKQYNGGPVGLDTIAVTIGEERITIEDVYEPFLIQKGFLERTPRGRKATP
LAYGHFAKSNEERE

Nucleotide


Download         Length: 1005 bp        

>NTDB_id=807154 RL452_RS07990 WP_001005765.1 1641231..1642235(-) (ruvB) [Staphylococcus aureus strain Sa9]
ATGAATGAGCGTATGGTTGATCAATCAATGCATAGTGAAGAAACTGATTTCGAATTGTCGCTTAGACCTACGAGATTACG
ACAATATATTGGTCAAAATTCAATAAAAAGTAATTTAGAAGTATTTATTAAAGCGGCTAAACTTCGTCATGAACCATTAG
ATCATGTATTGCTTTTTGGCCCCCCTGGATTAGGTAAGACAACATTATCTAATATCATTGCCAATGAAATGGAAGTTAAT
ATACGTACAGTATCAGGGCCTTCATTAGAAAGACCTGGTGATTTGGCTGCAATTTTATCAGGGCTTCAACCTGGAGATGT
TTTGTTTATTGATGAAATACACAGACTGAGTAGTGTTGTTGAAGAAGTGTTATACCCTGCAATGGAAGATTTCTTTTTAG
ATATTATCATTGGTAAAGGCGATGAGGCTAGAAGTATCCGTATCGACTTACCTCCATTCACTTTGGTAGGTGCAACAACG
CGAGCTGGCAGCTTAACAGGTCCACTAAGGGATCGATTTGGTGTGCACTTAAGATTAGAATATTATAATGAATCAGATTT
AAAAGAAATCATTATTAGAACAGCTGAGGTTTTAGGCACAGGTATTGATGATGAAAGTGCTATTGAACTTGCTAAACGTT
CTAGAGGGACTCCAAGAGTAGCAAATCGACTATTGAAACGGGTAAGAGACTTCCAGCAAGTGAATGAAGATGAACAAATA
TACATTGAAACAACAAAACACGCATTAGGTTTACTTCAAGTTGATCAACACGGACTAGATTACATCGATCATAAAATGAT
GAACTGTATTATTAAGCAGTATAATGGTGGACCTGTTGGTTTAGATACGATTGCCGTAACAATTGGCGAAGAACGTATTA
CAATTGAGGACGTTTATGAGCCATTTCTTATTCAGAAAGGCTTTTTAGAACGTACGCCACGTGGCAGAAAAGCAACACCA
TTAGCTTATGGACATTTTGCAAAGTCGAATGAGGAGAGAGAATAA

Domains

Predicted by InterProScan.

RuvB C-terminal winged helix domain (WHD_RuvB)

(257-326)

RuvB AAA lid domain (AAA_lid_4)

(182-255)

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(21-179)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q2YT89

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvB Bacillus subtilis subsp. subtilis str. 168

65.951

97.605

0.644
  ruvB Streptococcus pneumoniae TIGR4

57.879

98.802

0.572
  ruvB Streptococcus pneumoniae R6

57.576

98.802

0.569
  ruvB Streptococcus pneumoniae D39

57.576

98.802

0.569
  ruvB Helicobacter pylori 26695

56.875

95.808

0.545
  ruvB Synechocystis sp. PCC 6803

53.438

95.808

0.512