Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   P5647_RS16425 Genome accession   NZ_CP120622
Coordinates   3147523..3148167 (-) Length   214 a.a.
NCBI ID   WP_003220716.1    Uniprot ID   -
Organism   Bacillus subtilis strain DSM 1090     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3142523..3153167
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P5647_RS16390 (P5647_16390) mrpB 3143715..3144146 (+) 432 WP_003228819.1 Na(+)/H(+) antiporter subunit B -
  P5647_RS16395 (P5647_16395) mrpC 3144146..3144487 (+) 342 WP_003220730.1 Na(+)/H(+) antiporter subunit C -
  P5647_RS16400 (P5647_16400) mrpD 3144480..3145961 (+) 1482 WP_003244432.1 Na+/H+ antiporter subunit D -
  P5647_RS16405 (P5647_16405) mrpE 3145967..3146443 (+) 477 WP_003244015.1 Na+/H+ antiporter subunit E -
  P5647_RS16410 (P5647_16410) mrpF 3146443..3146727 (+) 285 WP_003228814.1 Na(+)/H(+) antiporter subunit F1 -
  P5647_RS16415 (P5647_16415) mnhG 3146711..3147085 (+) 375 WP_003244302.1 monovalent cation/H(+) antiporter subunit G -
  P5647_RS16420 (P5647_16420) yuxO 3147124..3147504 (-) 381 WP_003228810.1 hotdog fold thioesterase -
  P5647_RS16425 (P5647_16425) comA 3147523..3148167 (-) 645 WP_003220716.1 two-component system response regulator ComA Regulator
  P5647_RS16430 (P5647_16430) comP 3148248..3150556 (-) 2309 Protein_3179 two-component system sensor histidine kinase ComP -
  P5647_RS16435 (P5647_16435) comX 3150571..3150738 (-) 168 WP_003242801.1 competence pheromone ComX Regulator
  P5647_RS16440 (P5647_16440) comQ 3150726..3151625 (-) 900 WP_003243039.1 ComX modifying isoprenyl transferase ComQ Regulator
  P5647_RS16445 (P5647_16445) degQ 3151810..3151950 (-) 141 WP_003220708.1 degradation enzyme regulation protein DegQ Regulator
  P5647_RS16450 (P5647_16450) - 3152172..3152297 (+) 126 WP_003228793.1 hypothetical protein -
  P5647_RS16455 (P5647_16455) - 3152411..3152779 (+) 369 WP_003243784.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24128.51 Da        Isoelectric Point: 4.6857

>NTDB_id=807155 P5647_RS16425 WP_003220716.1 3147523..3148167(-) (comA) [Bacillus subtilis strain DSM 1090]
MKKILVIDDHPAVMEGTKTILETDSNLSVDCLSPEPSEQFIKQHDFSSYDLILMDLNLGGEVNGMELSKQILQENPHCKI
IVYTGYEVEDYFEEAIRAGLHGAISKTESKEKITQYIYHVLNGEILVDFAYFKQLMTQQKTKPAPSSQKEQDVLTPRECL
ILQEVEKGFTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDGVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=807155 P5647_RS16425 WP_003220716.1 3147523..3148167(-) (comA) [Bacillus subtilis strain DSM 1090]
ATGAAAAAGATACTAGTGATTGATGACCATCCGGCTGTCATGGAAGGCACCAAGACAATTTTGGAAACGGATTCGAATTT
GTCTGTTGATTGTCTCAGTCCTGAACCGAGCGAACAGTTTATCAAGCAGCATGATTTCTCGTCATATGATCTCATTTTAA
TGGATCTGAATCTAGGCGGCGAGGTCAATGGGATGGAGCTTTCTAAACAGATTTTACAAGAGAATCCTCATTGTAAAATT
ATCGTGTATACCGGTTATGAGGTCGAGGATTATTTCGAGGAAGCGATTCGTGCGGGTCTGCACGGTGCCATCAGCAAAAC
GGAATCTAAAGAAAAGATCACCCAATACATATACCACGTACTCAACGGAGAAATTTTAGTCGATTTTGCTTACTTTAAAC
AGCTGATGACTCAGCAAAAAACAAAGCCGGCTCCTTCCTCTCAAAAAGAACAAGATGTGCTCACACCTAGAGAATGCCTG
ATTCTTCAAGAAGTTGAAAAGGGATTTACAAACCAAGAAATCGCAGATGCCCTTCATTTAAGCAAGCGGTCCATTGAATA
CAGCTTGACATCGATTTTCAATAAGCTGAATGTCGGTTCACGGACGGAAGCGGTTTTGATTGCGAAATCAGACGGTGTAC
TTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-208)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

100

100

1