Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   K5609_RS19295 Genome accession   NZ_AP023033
Coordinates   4169021..4170535 (-) Length   504 a.a.
NCBI ID   WP_221075038.1    Uniprot ID   -
Organism   Agarivorans aestuarii strain KCTC 32543     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4164021..4175535
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K5609_RS19285 recC 4164681..4168052 (-) 3372 WP_221075037.1 exodeoxyribonuclease V subunit gamma -
  K5609_RS19290 - 4168163..4168558 (-) 396 WP_016402299.1 hypothetical protein -
  K5609_RS19295 comM 4169021..4170535 (-) 1515 WP_221075038.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  K5609_RS19300 - 4170617..4171030 (-) 414 WP_016402301.1 CBS domain-containing protein -
  K5609_RS19305 - 4171169..4171729 (-) 561 WP_221075039.1 sugar O-acetyltransferase -
  K5609_RS19310 - 4171798..4172244 (-) 447 WP_246611901.1 DUF192 domain-containing protein -
  K5609_RS19315 ilvG 4172752..4174410 (+) 1659 WP_220720085.1 acetolactate synthase 2 catalytic subunit -
  K5609_RS19320 ilvM 4174410..4174682 (+) 273 WP_221075040.1 acetolactate synthase 2 small subunit -

Sequence

Protein


Download         Length: 504 a.a.        Molecular weight: 54069.96 Da        Isoelectric Point: 7.8777

>NTDB_id=80695 K5609_RS19295 WP_221075038.1 4169021..4170535(-) (comM) [Agarivorans aestuarii strain KCTC 32543]
MGLAIVKTCTLVGMEALNVTVEVHLANGLPAFSIVGLPETSVKEAKDRVRSAILNSGFSFPAKRITVNLAPADVPKSGGR
FDLPIAIGILAAAGDVPLACLNDMAFCGELALSGAIRPVSGAIATALSISQQGLTLVTSEQDADAAVRVPEAKVHGSASL
QQLSAGLNGQSAFNLKDSQVIEPQFNESLLDMSEVQGQHLAKRALELAAAGAHNLLMMGPPGTGKTMLASRLPGILPSLT
EQQAIEVAAINSVSAQQRELEQWYIPPFRSPHHSASMVALVGGGSNPKPGEITLAHHGVLFLDELPEFARSTLDALRQPL
ESGEVHISRAALQVRFPSRFQLVAAMNPSPCGYYQGQQLRSNPDQILKYLGKLSGPFLDRFDLSVEVAELPKGSLTQHAQ
GESSAQIKQRVINARKLQLERSGKLNSQLSGKELHQHASLSLENSEFLESSISQLGLSARAFHRVWRLARTIADLKQQKD
IQRNDIVEALSYRAMDRLLKRLSA

Nucleotide


Download         Length: 1515 bp        

>NTDB_id=80695 K5609_RS19295 WP_221075038.1 4169021..4170535(-) (comM) [Agarivorans aestuarii strain KCTC 32543]
ATGGGTTTAGCGATAGTTAAAACGTGTACCTTAGTGGGCATGGAAGCCTTAAATGTGACTGTAGAAGTGCATTTAGCCAA
TGGTTTGCCCGCTTTTAGCATTGTAGGTTTACCAGAAACCTCGGTTAAAGAAGCTAAAGATAGAGTTCGTAGCGCCATTC
TCAATAGTGGCTTTTCCTTTCCTGCAAAACGCATTACCGTAAATCTAGCGCCTGCAGATGTTCCTAAAAGTGGAGGTCGC
TTTGATCTGCCAATTGCTATTGGTATTTTAGCCGCTGCTGGTGATGTTCCTCTAGCGTGTTTGAATGACATGGCGTTTTG
CGGTGAGCTGGCTTTATCGGGAGCAATTCGCCCGGTGAGCGGAGCAATTGCCACTGCCTTATCAATAAGCCAGCAGGGTT
TAACTTTGGTGACTAGTGAGCAAGATGCCGACGCAGCGGTAAGAGTGCCAGAGGCTAAAGTACATGGCAGCGCCAGCTTG
CAGCAGTTAAGTGCTGGCCTCAATGGCCAAAGCGCTTTTAACTTGAAGGACTCTCAAGTTATTGAGCCGCAGTTTAACGA
AAGCCTCTTAGATATGAGCGAAGTGCAAGGTCAACATCTAGCAAAACGTGCTTTAGAACTAGCTGCCGCCGGCGCGCATA
ATCTGTTAATGATGGGCCCTCCAGGTACCGGAAAAACTATGTTGGCGAGTCGTTTACCGGGCATATTACCCAGCTTAACT
GAGCAACAAGCCATAGAGGTGGCGGCAATAAACTCGGTAAGCGCTCAGCAACGAGAGCTAGAGCAATGGTACATTCCGCC
TTTTCGTAGCCCGCATCATAGTGCCTCAATGGTCGCGCTGGTGGGCGGTGGTTCAAACCCTAAGCCCGGCGAAATAACCT
TAGCCCATCATGGTGTGCTTTTTTTAGACGAACTTCCTGAGTTTGCTCGCAGTACCTTAGATGCATTGCGCCAGCCGCTT
GAGTCGGGAGAGGTGCATATTTCTCGTGCTGCTTTGCAGGTGCGCTTCCCTTCTCGTTTCCAGTTGGTGGCGGCCATGAA
CCCTTCACCTTGTGGTTACTATCAAGGCCAGCAGCTACGCAGTAATCCCGACCAAATTTTAAAATATCTTGGCAAGCTAT
CGGGGCCATTTTTAGACCGCTTTGATTTAAGTGTTGAGGTAGCTGAATTACCTAAAGGCAGTTTAACTCAGCATGCGCAG
GGAGAGTCTAGTGCCCAGATAAAACAGCGGGTGATTAACGCGCGCAAGCTGCAGTTGGAGCGTAGCGGTAAGTTAAATAG
CCAACTCTCTGGAAAAGAGCTTCACCAGCATGCGAGTTTAAGCCTTGAAAATAGTGAGTTTTTAGAAAGCAGTATTAGCC
AATTAGGTTTGTCTGCTCGCGCATTTCATCGCGTTTGGCGCTTAGCCAGAACCATTGCCGATCTAAAGCAGCAAAAAGAT
ATTCAACGCAATGACATTGTAGAGGCACTAAGCTATCGGGCAATGGATCGCTTACTTAAGCGTTTGTCTGCCTAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-135)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(191-392)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

55.248

100

0.554
  comM Haemophilus influenzae Rd KW20

53.649

100

0.54
  comM Vibrio campbellii strain DS40M4

53.861

100

0.54
  comM Glaesserella parasuis strain SC1401

52.767

100

0.53
  comM Legionella pneumophila str. Paris

47.211

99.603

0.47
  comM Legionella pneumophila strain ERS1305867

47.211

99.603

0.47
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

41.782

100

0.419

Multiple sequence alignment