Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   P5649_RS09755 Genome accession   NZ_CP120613
Coordinates   1902854..1903498 (+) Length   214 a.a.
NCBI ID   WP_003220716.1    Uniprot ID   -
Organism   Bacillus subtilis strain DSM 23521     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1897854..1908498
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P5649_RS09725 (P5649_09725) - 1898241..1898609 (-) 369 WP_003243784.1 hypothetical protein -
  P5649_RS09730 (P5649_09730) - 1898723..1898848 (-) 126 WP_003228793.1 hypothetical protein -
  P5649_RS09735 (P5649_09735) degQ 1899070..1899210 (+) 141 WP_003220708.1 degradation enzyme regulation protein DegQ Regulator
  P5649_RS09740 (P5649_09740) comQ 1899395..1900294 (+) 900 WP_003243039.1 ComX modifying isoprenyl transferase ComQ Regulator
  P5649_RS09745 (P5649_09745) comX 1900282..1900449 (+) 168 WP_003242801.1 competence pheromone ComX Regulator
  P5649_RS09750 (P5649_09750) comP 1900464..1902773 (+) 2310 WP_032723438.1 two-component system sensor histidine kinase ComP Regulator
  P5649_RS09755 (P5649_09755) comA 1902854..1903498 (+) 645 WP_003220716.1 two-component system response regulator ComA Regulator
  P5649_RS09760 (P5649_09760) yuxO 1903517..1903897 (+) 381 WP_003228810.1 hotdog fold thioesterase -
  P5649_RS09765 (P5649_09765) mnhG 1903936..1904310 (-) 375 WP_003244302.1 monovalent cation/H(+) antiporter subunit G -
  P5649_RS09770 (P5649_09770) mrpF 1904294..1904578 (-) 285 WP_003228814.1 Na(+)/H(+) antiporter subunit F1 -
  P5649_RS09775 (P5649_09775) mrpE 1904578..1905054 (-) 477 WP_003244015.1 Na+/H+ antiporter subunit E -
  P5649_RS09780 (P5649_09780) mrpD 1905060..1906541 (-) 1482 WP_003244432.1 Na+/H+ antiporter subunit D -
  P5649_RS09785 (P5649_09785) mrpC 1906534..1906875 (-) 342 WP_003220730.1 Na(+)/H(+) antiporter subunit C -
  P5649_RS09790 (P5649_09790) mrpB 1906875..1907306 (-) 432 WP_003228819.1 Na(+)/H(+) antiporter subunit B -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24128.51 Da        Isoelectric Point: 4.6857

>NTDB_id=806905 P5649_RS09755 WP_003220716.1 1902854..1903498(+) (comA) [Bacillus subtilis strain DSM 23521]
MKKILVIDDHPAVMEGTKTILETDSNLSVDCLSPEPSEQFIKQHDFSSYDLILMDLNLGGEVNGMELSKQILQENPHCKI
IVYTGYEVEDYFEEAIRAGLHGAISKTESKEKITQYIYHVLNGEILVDFAYFKQLMTQQKTKPAPSSQKEQDVLTPRECL
ILQEVEKGFTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDGVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=806905 P5649_RS09755 WP_003220716.1 1902854..1903498(+) (comA) [Bacillus subtilis strain DSM 23521]
ATGAAAAAGATACTAGTGATTGATGACCATCCGGCTGTCATGGAAGGCACCAAGACAATTTTGGAAACGGATTCGAATTT
GTCTGTTGATTGTCTCAGTCCTGAACCGAGCGAACAGTTTATCAAGCAGCATGATTTCTCGTCATATGATCTCATTTTAA
TGGATCTGAATCTAGGCGGCGAGGTCAATGGGATGGAGCTTTCTAAACAGATTTTACAAGAGAATCCTCATTGTAAAATT
ATCGTGTATACCGGTTATGAGGTCGAGGATTATTTCGAGGAAGCGATTCGTGCGGGTCTGCACGGTGCCATCAGCAAAAC
GGAATCTAAAGAAAAGATCACCCAATACATATACCACGTACTCAACGGAGAAATTTTAGTCGATTTTGCTTACTTTAAAC
AGCTGATGACTCAGCAAAAAACAAAGCCGGCTCCTTCCTCTCAAAAAGAACAAGATGTGCTCACACCTAGAGAATGCCTG
ATTCTTCAAGAAGTTGAAAAGGGATTTACAAACCAAGAAATCGCAGATGCCCTTCATTTAAGCAAGCGGTCCATTGAATA
CAGCTTGACATCGATTTTCAATAAGCTGAATGTCGGTTCACGGACGGAAGCGGTTTTGATTGCGAAATCAGACGGTGTAC
TTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-208)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

100

100

1