Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   RLT59_RS30200 Genome accession   NZ_CP134612
Coordinates   6637962..6640079 (+) Length   705 a.a.
NCBI ID   WP_311306331.1    Uniprot ID   -
Organism   Streptomyces sp. ITFR-6     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6632962..6645079
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RLT59_RS30175 (RLT59_30175) - 6633426..6633788 (+) 363 WP_311306326.1 cupin domain-containing protein -
  RLT59_RS30180 (RLT59_30180) - 6633841..6635139 (-) 1299 WP_311306327.1 MFS transporter -
  RLT59_RS30185 (RLT59_30185) - 6635205..6635747 (-) 543 WP_311306328.1 methylated-DNA--[protein]-cysteine S-methyltransferase -
  RLT59_RS30190 (RLT59_30190) - 6635840..6636796 (-) 957 WP_311306329.1 glycerophosphodiester phosphodiesterase family protein -
  RLT59_RS30195 (RLT59_30195) - 6637047..6637922 (+) 876 WP_311306330.1 MHYT domain-containing protein -
  RLT59_RS30200 (RLT59_30200) uvrB 6637962..6640079 (+) 2118 WP_311306331.1 excinuclease ABC subunit UvrB Machinery gene
  RLT59_RS30205 (RLT59_30205) - 6640211..6640789 (+) 579 WP_136328667.1 TerD family protein -
  RLT59_RS30210 (RLT59_30210) - 6640935..6642875 (+) 1941 WP_311306332.1 TerD family protein -
  RLT59_RS30215 (RLT59_30215) - 6643135..6644148 (+) 1014 WP_311306333.1 TerC family protein -
  RLT59_RS30220 (RLT59_30220) - 6644224..6644880 (-) 657 WP_311306334.1 MBL fold metallo-hydrolase -

Sequence

Protein


Download         Length: 705 a.a.        Molecular weight: 79168.75 Da        Isoelectric Point: 4.8381

>NTDB_id=806905 RLT59_RS30200 WP_311306331.1 6637962..6640079(+) (uvrB) [Streptomyces sp. ITFR-6]
MRPVSNIERSVAPFEVVSPYQPSGDQPTAIAELERRVTAGEKDVVLLGATGTGKSATTAWMIEKLQRPTLVMAPNKTLAA
QLANEFRELLPNNAVEYFVSYYDYYQPEAYVPQSDTYIEKDSSINEEVERLRHSATNSLLTRRDVVVVASVSCIYGLGTP
QEYVDRMVQLKVGDEIDRDQLLRRFVEIQYSRNDLAFTRGSFRVRGDTIEIFPVYEELAVRIEMFGDEIEALSTLHPLTG
EVISEDQSLHVFPASHYVAGPERLEKAVGGIEQELEQRLAELEKQGKMLEAQRLRMRTTYDIEMLRQIGTCSGVENYSMH
FDGRTPGTAPNTLLDYFPEDFLLVLDESHVTVPQIGAMYEGDASRKRTLVDHGFRLPSALDNRPLKWEEFLGRINQTVYL
SATPGKYELSRGDGFVEQIIRPTGLVDPEIVVKPTEGQIDDLVHEIRKRTEKDERVLVTTLTKKMSEDLTDYFLELGIQV
RYLHSDVDTLRRIELLRELRSGEYDVLVGINLLREGLDLPEVSLVAILDADKQGFLRSGTSLIQTIGRAARNVSGQVHMY
ADKVTPAMAQAIDETNRRREKQIAYNTERGVDPQPLRKKINDIVASIAREEVDTEQLLGTGYRQTKGTKAPVPTLGIKAG
SAKTKGDGAAVTDRPATELAGIIEEMTDRMRAAAADLQFEVAARLRDEVGELKKELRQMREAGLA

Nucleotide


Download         Length: 2118 bp        

>NTDB_id=806905 RLT59_RS30200 WP_311306331.1 6637962..6640079(+) (uvrB) [Streptomyces sp. ITFR-6]
ATGCGGCCCGTTTCGAATATCGAACGTTCGGTGGCGCCTTTCGAGGTCGTCAGTCCCTACCAGCCCAGTGGCGACCAGCC
GACGGCCATCGCCGAGCTGGAGCGGCGCGTCACGGCAGGTGAGAAGGATGTCGTGCTGCTCGGCGCGACCGGCACCGGAA
AGTCGGCGACCACCGCCTGGATGATCGAGAAGCTCCAGCGCCCCACCCTGGTGATGGCGCCGAACAAGACCCTCGCGGCC
CAGCTCGCCAACGAATTCCGCGAGCTCCTGCCCAACAACGCCGTCGAGTACTTCGTCTCGTACTACGACTACTACCAGCC
CGAGGCGTACGTCCCGCAGTCGGACACCTACATCGAGAAGGACTCCTCGATCAACGAGGAGGTCGAGCGGCTGCGCCACT
CCGCGACGAACTCCCTGCTCACCCGGCGTGACGTCGTCGTGGTCGCCTCCGTCTCCTGCATCTACGGCCTCGGCACACCG
CAGGAGTACGTGGACCGGATGGTCCAGCTCAAGGTGGGCGACGAGATCGACCGCGACCAGCTGCTGCGCCGCTTCGTCGA
GATCCAGTACAGCCGCAACGACCTGGCGTTCACCCGGGGCAGTTTCCGGGTGCGGGGCGACACCATCGAGATCTTCCCGG
TCTACGAGGAGCTCGCCGTCCGCATCGAGATGTTCGGTGACGAGATCGAGGCGCTCTCCACCCTCCACCCGCTCACCGGC
GAGGTCATCAGCGAGGACCAGTCCCTCCACGTCTTCCCCGCCAGCCACTACGTGGCGGGTCCTGAGCGCCTGGAGAAGGC
AGTCGGCGGGATCGAGCAGGAGCTGGAGCAGCGGCTCGCCGAGCTGGAGAAGCAGGGCAAGATGCTGGAGGCCCAGCGGC
TGCGGATGCGCACCACGTACGACATCGAGATGCTCCGCCAGATCGGCACCTGCTCGGGTGTCGAGAACTACTCGATGCAC
TTCGACGGCCGCACCCCCGGCACCGCGCCCAACACCCTCCTGGACTACTTCCCCGAGGACTTCCTGCTCGTCCTCGACGA
ATCGCACGTCACCGTGCCGCAGATCGGCGCGATGTACGAGGGCGACGCCTCCCGCAAGCGGACCCTCGTCGACCACGGCT
TCCGGCTGCCCTCCGCCCTGGACAACCGCCCGCTGAAGTGGGAGGAGTTCCTCGGACGGATCAACCAGACGGTCTACCTC
TCCGCCACCCCCGGCAAGTACGAGCTCTCCCGCGGCGACGGCTTCGTGGAGCAGATCATCCGGCCCACCGGCCTCGTCGA
CCCGGAGATCGTCGTCAAGCCCACCGAGGGCCAGATCGACGACCTGGTGCACGAGATCCGCAAGCGCACCGAGAAGGACG
AGCGCGTCCTGGTCACCACCCTGACCAAGAAGATGTCGGAGGACCTCACCGACTACTTCCTGGAGCTGGGCATCCAGGTC
CGCTATCTGCACAGCGACGTCGACACCCTGCGCCGCATCGAGCTGCTGCGCGAGCTGCGCTCCGGCGAGTACGACGTCCT
GGTCGGCATCAACCTCCTGCGTGAGGGCCTCGACCTGCCGGAGGTCTCGCTCGTGGCGATCCTCGACGCCGACAAGCAGG
GCTTCCTGCGGTCGGGCACCTCGCTGATCCAGACCATCGGCCGAGCCGCTCGTAACGTGTCGGGCCAGGTCCATATGTAC
GCGGACAAGGTCACCCCGGCGATGGCGCAGGCCATCGACGAGACCAACCGGCGCCGTGAGAAGCAGATCGCCTACAACAC
CGAGCGGGGAGTCGACCCGCAGCCGCTCCGCAAGAAGATCAACGACATCGTCGCGTCCATCGCCCGCGAGGAGGTCGACA
CCGAGCAGCTGCTCGGCACCGGCTACCGCCAGACGAAGGGCACCAAGGCACCCGTGCCCACGCTGGGCATCAAGGCCGGT
TCCGCGAAGACCAAGGGCGACGGGGCGGCGGTCACCGACCGCCCGGCCACCGAGCTCGCCGGGATCATCGAGGAGATGAC
CGACCGGATGCGCGCCGCCGCCGCGGACCTGCAGTTCGAGGTGGCCGCCCGACTGCGCGACGAGGTGGGGGAATTGAAGA
AGGAGCTGCGCCAGATGCGGGAGGCAGGCCTGGCCTGA

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(440-551)

Ultra-violet resistance protein B (UvrB)

(559-600)

Type III restriction enzyme, res subunit (ResIII)

(25-134)

UvrB/uvrC motif (UVR)

(663-695)

UvrB interaction domain (UvrB_inter)

(168-257)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae TIGR4

56.725

97.021

0.55
  uvrB Streptococcus pneumoniae R6

56.725

97.021

0.55
  uvrB Streptococcus pneumoniae D39

56.725

97.021

0.55