Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   RLT59_RS27140 Genome accession   NZ_CP134612
Coordinates   5959104..5960837 (-) Length   577 a.a.
NCBI ID   WP_311305811.1    Uniprot ID   -
Organism   Streptomyces sp. ITFR-6     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 5954104..5965837
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RLT59_RS27130 (RLT59_27130) - 5955948..5957123 (+) 1176 WP_311307875.1 RNA polymerase sigma factor -
  RLT59_RS27135 (RLT59_27135) rcrQ 5957173..5959104 (-) 1932 WP_311305810.1 ABC transporter ATP-binding protein Regulator
  RLT59_RS27140 (RLT59_27140) rcrP 5959104..5960837 (-) 1734 WP_311305811.1 ABC transporter ATP-binding protein Regulator
  RLT59_RS27145 (RLT59_27145) - 5960974..5962419 (-) 1446 WP_311305812.1 FGGY family carbohydrate kinase -
  RLT59_RS27150 (RLT59_27150) - 5962513..5962812 (-) 300 WP_311307876.1 YtxH domain-containing protein -
  RLT59_RS27170 (RLT59_27170) - 5963544..5964281 (-) 738 WP_311305813.1 FCD domain-containing protein -
  RLT59_RS27175 (RLT59_27175) - 5964344..5964966 (-) 623 Protein_5375 bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62505.49 Da        Isoelectric Point: 5.3705

>NTDB_id=806901 RLT59_RS27140 WP_311305811.1 5959104..5960837(-) (rcrP) [Streptomyces sp. ITFR-6]
MLIKLLRTYLGPYKKPIALLVVFQLLQTSAALYLPTLNADIIDNGVVEGDTGYILQYGGAMLVVSIAQVVCNIGAVYIGA
RTASALGRDVRASVFDRVQSFSARELGRFGAPSLITRTTNDVQQIQMLVLMTFTLMVSAPIMCVGGIIMALGQDVPLSAV
LLAVVPVLGISVSLIVKRMRPLFRTMQERLDTVNRVLREQITGNRVIRAFVRDGYEEKRFRGANTELTDVALSTGRLMAL
MFPTVMTVVNVSSIAVVWFGAHRIDSGGMQIGALTAFLSYLMQIVMSVMMATFMFMMVPRAEVCAERIQEVLETDSSVVP
PVDPVTELRAHGHLEIRGADFRYPGAEASVLRSVDLVARPGETTAIIGSTGSGKSTLLGLVPRLFDVTDGQVLVDGTDVR
TLAPALLAKTVSLVPQKPYLFSGTVATNLRYGNPDATDEELWHALEVAQAKEFVEGLEHGLDAPIAQGGTNVSGGQRQRL
SIARTLVQQPEIYLFDDSFSALDYTTDAALRAALLRETAAATVVIVAQRVSTIRDADRILVMDEGRVVGSGSHHELMEGN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=806901 RLT59_RS27140 WP_311305811.1 5959104..5960837(-) (rcrP) [Streptomyces sp. ITFR-6]
GTGCTCATAAAACTCCTGCGGACCTATCTCGGTCCGTACAAGAAGCCGATCGCGCTGCTGGTCGTCTTCCAGCTGCTCCA
GACCTCCGCCGCCCTCTATCTGCCCACCCTGAACGCCGACATCATTGACAACGGTGTCGTCGAGGGCGACACGGGCTACA
TCCTTCAGTACGGCGGCGCCATGCTCGTCGTCAGCATCGCCCAGGTGGTCTGCAACATCGGGGCCGTCTACATCGGCGCC
CGTACCGCTTCCGCGCTCGGCCGCGATGTCCGGGCGTCGGTCTTCGACCGGGTGCAGTCGTTCTCCGCGCGTGAGCTCGG
CCGGTTCGGCGCGCCGTCGCTGATCACCCGTACGACCAATGACGTCCAGCAGATCCAGATGCTGGTCCTGATGACGTTCA
CGCTGATGGTCTCGGCACCGATCATGTGCGTCGGCGGCATCATCATGGCGCTCGGCCAGGACGTCCCGCTGTCCGCGGTG
CTCCTCGCGGTGGTGCCGGTCCTCGGAATCTCGGTGAGCCTGATCGTGAAGCGGATGCGTCCGCTGTTCCGGACGATGCA
GGAGCGGCTCGACACGGTGAACCGGGTGCTGCGCGAGCAGATCACCGGCAACCGGGTCATCCGCGCCTTCGTCCGCGACG
GCTACGAGGAGAAGCGTTTCCGGGGCGCCAACACCGAGCTGACCGATGTGGCGCTGTCCACGGGCCGGCTGATGGCACTG
ATGTTCCCGACCGTGATGACGGTCGTGAACGTGTCGTCGATCGCCGTCGTCTGGTTCGGTGCGCACCGGATCGACAGCGG
CGGAATGCAGATCGGGGCGCTGACCGCGTTCCTCTCGTATCTGATGCAGATCGTCATGTCGGTGATGATGGCCACCTTCA
TGTTCATGATGGTGCCGCGCGCCGAGGTGTGCGCCGAGCGCATCCAGGAGGTCCTGGAGACCGATTCCAGCGTGGTGCCG
CCGGTCGATCCGGTGACCGAACTGCGCGCCCACGGGCATCTGGAGATCCGGGGCGCCGACTTCCGCTACCCCGGTGCCGA
GGCGTCGGTGCTGCGCTCTGTGGATCTGGTGGCCCGGCCCGGCGAGACGACCGCGATCATCGGGTCCACGGGCAGCGGCA
AGTCCACGCTGCTCGGACTCGTACCCCGGCTGTTCGATGTGACGGACGGCCAGGTGCTGGTCGACGGGACGGACGTACGG
ACGCTGGCTCCGGCACTGCTGGCGAAGACCGTGAGCCTGGTCCCACAGAAGCCGTACCTGTTCTCCGGAACGGTCGCGAC
CAACCTGCGGTACGGGAACCCGGACGCGACCGACGAGGAGCTGTGGCACGCGCTGGAGGTCGCCCAGGCCAAGGAGTTCG
TCGAGGGTCTGGAACACGGTCTGGACGCGCCGATCGCGCAGGGCGGCACCAATGTCTCCGGCGGGCAGCGGCAGCGCCTC
TCGATCGCCCGGACGCTGGTCCAGCAGCCGGAGATCTACCTCTTCGACGACTCGTTCTCCGCGCTGGACTACACCACGGA
CGCCGCGCTGCGCGCGGCGCTGCTGCGGGAGACCGCGGCCGCGACCGTGGTGATCGTCGCGCAGCGGGTGTCCACCATCC
GCGACGCCGACCGGATCCTGGTGATGGACGAGGGCCGGGTGGTCGGCTCCGGCAGCCACCACGAGCTGATGGAAGGCAAT
GAAACATACCGGGAGATCGTTCTCTCCCAGCTGACGGAAGCGGAGGCCGCGTAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(352-498)

ABC transporter transmembrane region (ABC_membrane)

(18-288)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

40.7

94.107

0.383