Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | P5636_RS12810 | Genome accession | NZ_CP120609 |
| Coordinates | 2384540..2385040 (-) | Length | 166 a.a. |
| NCBI ID | WP_013059914.1 | Uniprot ID | A0A0B6A5N1 |
| Organism | Priestia megaterium DSM 319 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 2376254..2427744 | 2384540..2385040 | within | 0 |
Gene organization within MGE regions
Location: 2376254..2427744
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| P5636_RS12755 (P5636_12755) | yycF | 2376254..2376961 (-) | 708 | WP_013085552.1 | response regulator YycF | - |
| P5636_RS12780 (P5636_12780) | - | 2377740..2379026 (-) | 1287 | WP_013085553.1 | adenylosuccinate synthase | - |
| P5636_RS12785 (P5636_12785) | dnaB | 2379214..2380578 (-) | 1365 | WP_013085554.1 | replicative DNA helicase | - |
| P5636_RS12790 (P5636_12790) | rplI | 2380694..2381143 (-) | 450 | WP_013085555.1 | 50S ribosomal protein L9 | - |
| P5636_RS12795 (P5636_12795) | - | 2381140..2383113 (-) | 1974 | WP_013085556.1 | DHH family phosphoesterase | - |
| P5636_RS12800 (P5636_12800) | - | 2383150..2384094 (-) | 945 | WP_013085557.1 | YybS family protein | - |
| P5636_RS12805 (P5636_12805) | rpsR | 2384234..2384473 (-) | 240 | WP_013059913.1 | 30S ribosomal protein S18 | - |
| P5636_RS12810 (P5636_12810) | ssbA | 2384540..2385040 (-) | 501 | WP_013059914.1 | single-stranded DNA-binding protein | Machinery gene |
| P5636_RS12815 (P5636_12815) | rpsF | 2385089..2385376 (-) | 288 | WP_013059915.1 | 30S ribosomal protein S6 | - |
| P5636_RS12820 (P5636_12820) | ychF | 2385566..2386666 (-) | 1101 | WP_013085558.1 | redox-regulated ATPase YchF | - |
| P5636_RS12825 (P5636_12825) | - | 2386835..2387032 (-) | 198 | WP_013059917.1 | DUF951 domain-containing protein | - |
| P5636_RS12830 (P5636_12830) | - | 2387047..2387940 (-) | 894 | WP_013085559.1 | mechanosensitive ion channel family protein | - |
| P5636_RS12835 (P5636_12835) | - | 2388008..2389021 (-) | 1014 | WP_013085560.1 | membrane protein | - |
| P5636_RS12840 (P5636_12840) | yyaC | 2389108..2389728 (+) | 621 | WP_013085561.1 | spore protease YyaC | - |
| P5636_RS12845 (P5636_12845) | - | 2389761..2390630 (-) | 870 | WP_013085562.1 | ParB/RepB/Spo0J family partition protein | - |
| P5636_RS12850 (P5636_12850) | - | 2390602..2391384 (-) | 783 | WP_013085563.1 | AAA family ATPase | - |
| P5636_RS12855 (P5636_12855) | noc | 2391502..2392377 (-) | 876 | WP_013085564.1 | nucleoid occlusion protein | - |
| P5636_RS12860 (P5636_12860) | rsmG | 2392513..2393229 (-) | 717 | WP_013085565.1 | 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG | - |
| P5636_RS12865 (P5636_12865) | mnmG | 2393260..2395149 (-) | 1890 | WP_013059925.1 | tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG | - |
| P5636_RS12870 (P5636_12870) | mnmE | 2395172..2396560 (-) | 1389 | WP_013085566.1 | tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE | - |
| P5636_RS12875 (P5636_12875) | jag | 2396866..2397495 (-) | 630 | WP_013085567.1 | RNA-binding cell elongation regulator Jag/EloR | - |
| P5636_RS12880 (P5636_12880) | spoIIIJ | 2397492..2398256 (-) | 765 | WP_013085568.1 | YidC family membrane integrase SpoIIIJ | - |
| P5636_RS12885 (P5636_12885) | rnpA | 2398372..2398725 (-) | 354 | WP_013059929.1 | ribonuclease P protein component | - |
| P5636_RS12890 (P5636_12890) | rpmH | 2398836..2398970 (-) | 135 | WP_013059930.1 | 50S ribosomal protein L34 | - |
| P5636_RS12895 (P5636_12895) | dnaA | 2399725..2401068 (+) | 1344 | WP_013081315.1 | chromosomal replication initiator protein DnaA | - |
| P5636_RS12900 (P5636_12900) | dnaN | 2401255..2402391 (+) | 1137 | WP_013054821.1 | DNA polymerase III subunit beta | - |
| P5636_RS12905 (P5636_12905) | yaaA | 2402492..2402707 (+) | 216 | WP_013054822.1 | S4 domain-containing protein YaaA | - |
| P5636_RS12910 (P5636_12910) | recF | 2402722..2403840 (+) | 1119 | WP_013054823.1 | DNA replication/repair protein RecF | - |
| P5636_RS12915 (P5636_12915) | gyrB | 2404081..2405997 (+) | 1917 | WP_013081316.1 | DNA topoisomerase (ATP-hydrolyzing) subunit B | - |
| P5636_RS12920 (P5636_12920) | gyrA | 2406124..2408634 (+) | 2511 | WP_013081317.1 | DNA gyrase subunit A | - |
| P5636_RS12950 (P5636_12950) | - | 2413983..2414948 (-) | 966 | WP_013081318.1 | YaaC family protein | - |
| P5636_RS12955 (P5636_12955) | guaB | 2415065..2416531 (+) | 1467 | WP_013081319.1 | IMP dehydrogenase | - |
| P5636_RS12960 (P5636_12960) | - | 2416681..2418036 (+) | 1356 | WP_013054828.1 | serine hydrolase | - |
| P5636_RS12965 (P5636_12965) | pdxS | 2418227..2419114 (+) | 888 | WP_013054829.1 | pyridoxal 5'-phosphate synthase lyase subunit PdxS | - |
| P5636_RS12970 (P5636_12970) | pdxT | 2419136..2419723 (+) | 588 | WP_013081320.1 | pyridoxal 5'-phosphate synthase glutaminase subunit PdxT | - |
| P5636_RS12975 (P5636_12975) | serS | 2420046..2421323 (+) | 1278 | WP_013054831.1 | serine--tRNA ligase | - |
| P5636_RS12985 (P5636_12985) | - | 2421648..2422328 (-) | 681 | WP_013081321.1 | deoxynucleoside kinase | - |
| P5636_RS12990 (P5636_12990) | - | 2422328..2422963 (-) | 636 | WP_013081322.1 | deoxynucleoside kinase | - |
| P5636_RS12995 (P5636_12995) | - | 2423107..2424408 (-) | 1302 | WP_013081323.1 | glycoside hydrolase family 18 protein | - |
| P5636_RS13000 (P5636_13000) | - | 2424465..2425007 (-) | 543 | WP_013081324.1 | isochorismatase family cysteine hydrolase | - |
| P5636_RS13005 (P5636_13005) | tadA | 2425087..2425557 (+) | 471 | WP_013081325.1 | tRNA adenosine(34) deaminase TadA | - |
| P5636_RS13015 (P5636_13015) | dnaX | 2426056..2427744 (+) | 1689 | WP_013081326.1 | DNA polymerase III subunit gamma/tau | - |
Sequence
Protein
Download Length: 166 a.a. Molecular weight: 18132.76 Da Isoelectric Point: 4.6529
>NTDB_id=806774 P5636_RS12810 WP_013059914.1 2384540..2385040(-) (ssbA) [Priestia megaterium DSM 319]
MMNRVILVGRLTKDPELRYTPSGAAVATFTLAVNRTFTNQQGEREADFINCVVWRRQAENAANFLKKGSLAGVDGRLQSR
SYEGQDGRRVYVTEVVAESVQFLEPKSGGGDTQRSNFANTGGSGQGSPFGDNQNRNSGNQGYTRVDDDPFANNGETIDIS
DDDLPF
MMNRVILVGRLTKDPELRYTPSGAAVATFTLAVNRTFTNQQGEREADFINCVVWRRQAENAANFLKKGSLAGVDGRLQSR
SYEGQDGRRVYVTEVVAESVQFLEPKSGGGDTQRSNFANTGGSGQGSPFGDNQNRNSGNQGYTRVDDDPFANNGETIDIS
DDDLPF
Nucleotide
Download Length: 501 bp
>NTDB_id=806774 P5636_RS12810 WP_013059914.1 2384540..2385040(-) (ssbA) [Priestia megaterium DSM 319]
ATGATGAATCGCGTAATTCTCGTAGGACGCTTAACCAAAGATCCTGAATTACGTTATACCCCGAGTGGAGCAGCGGTTGC
AACATTCACTTTAGCGGTAAACCGCACATTTACAAATCAGCAAGGTGAACGTGAAGCTGACTTCATCAACTGTGTTGTAT
GGCGTCGTCAGGCTGAAAATGCAGCCAACTTCCTTAAAAAAGGAAGTTTAGCTGGTGTTGATGGTCGACTACAATCTCGC
AGTTACGAAGGACAAGACGGTCGTCGCGTATACGTAACGGAAGTTGTAGCGGAAAGTGTGCAGTTTTTAGAGCCGAAAAG
TGGCGGTGGGGATACGCAACGCAGTAACTTTGCTAACACTGGAGGATCTGGACAAGGCTCTCCATTTGGAGATAATCAGA
ACCGTAACTCAGGTAATCAAGGTTATACTCGCGTTGATGATGATCCATTTGCAAATAATGGCGAGACAATTGACATTTCA
GATGACGATTTACCGTTTTAA
ATGATGAATCGCGTAATTCTCGTAGGACGCTTAACCAAAGATCCTGAATTACGTTATACCCCGAGTGGAGCAGCGGTTGC
AACATTCACTTTAGCGGTAAACCGCACATTTACAAATCAGCAAGGTGAACGTGAAGCTGACTTCATCAACTGTGTTGTAT
GGCGTCGTCAGGCTGAAAATGCAGCCAACTTCCTTAAAAAAGGAAGTTTAGCTGGTGTTGATGGTCGACTACAATCTCGC
AGTTACGAAGGACAAGACGGTCGTCGCGTATACGTAACGGAAGTTGTAGCGGAAAGTGTGCAGTTTTTAGAGCCGAAAAG
TGGCGGTGGGGATACGCAACGCAGTAACTTTGCTAACACTGGAGGATCTGGACAAGGCTCTCCATTTGGAGATAATCAGA
ACCGTAACTCAGGTAATCAAGGTTATACTCGCGTTGATGATGATCCATTTGCAAATAATGGCGAGACAATTGACATTTCA
GATGACGATTTACCGTTTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
72.571 |
100 |
0.765 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
58.721 |
100 |
0.608 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
63.208 |
63.855 |
0.404 |
| ssb | Vibrio cholerae strain A1552 |
33.889 |
100 |
0.367 |
| ssb | Glaesserella parasuis strain SC1401 |
34.463 |
100 |
0.367 |