Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   P5622_RS12240 Genome accession   NZ_CP120598
Coordinates   2314107..2315177 (+) Length   356 a.a.
NCBI ID   WP_004399124.1    Uniprot ID   A0A809FNW6
Organism   Bacillus subtilis strain PRO115     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2309107..2320177
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P5622_RS12210 (P5622_12210) yqgY 2309300..2309545 (-) 246 WP_003226300.1 DUF2626 domain-containing protein -
  P5622_RS12215 (P5622_12215) mgsR 2309777..2310157 (+) 381 WP_003230147.1 transcriptional regulator MgsR -
  P5622_RS12225 (P5622_12225) rsbRD 2310381..2311217 (+) 837 WP_004398754.1 RsbT co-antagonist protein RsbRD -
  P5622_RS12230 (P5622_12230) yqhB 2311270..2312598 (-) 1329 WP_009967730.1 hemolysin family protein -
  P5622_RS12235 (P5622_12235) corA 2312741..2313694 (+) 954 WP_004399136.1 magnesium transporter CorA -
  P5622_RS12240 (P5622_12240) comGA 2314107..2315177 (+) 1071 WP_004399124.1 competence protein ComGA Machinery gene
  P5622_RS12245 (P5622_12245) comGB 2315164..2316201 (+) 1038 WP_009967727.1 comG operon protein ComGB Machinery gene
  P5622_RS12250 (P5622_12250) comGC 2316215..2316511 (+) 297 WP_003230162.1 comG operon protein ComGC Machinery gene
  P5622_RS12255 (P5622_12255) comGD 2316501..2316932 (+) 432 WP_004398628.1 comG operon protein ComGD Machinery gene
  P5622_RS12260 (P5622_12260) comGE 2316916..2317263 (+) 348 WP_003230165.1 ComG operon protein 5 Machinery gene
  P5622_RS12265 (P5622_12265) comGF 2317289..2317672 (+) 384 WP_003230168.1 ComG operon protein ComGF Machinery gene
  P5622_RS12270 (P5622_12270) comGG 2317673..2318047 (+) 375 WP_003230170.1 ComG operon protein ComGG Machinery gene
  P5622_RS12275 (P5622_12275) spoIIT 2318118..2318297 (+) 180 WP_003230176.1 YqzE family protein -
  P5622_RS12280 (P5622_12280) - 2318339..2318650 (-) 312 WP_347176576.1 DUF3889 domain-containing protein -
  P5622_RS12290 (P5622_12290) tapA 2318936..2319697 (+) 762 WP_004399106.1 amyloid fiber anchoring/assembly protein TapA -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 40458.64 Da        Isoelectric Point: 9.0175

>NTDB_id=806442 P5622_RS12240 WP_004399124.1 2314107..2315177(+) (comGA) [Bacillus subtilis strain PRO115]
MDSIEKVSKNLIEEAYLTKASDIHIVPRERDAIIHFRVDHALLKKRDMKKEECVRLISHFKFLSAMDIGERRKPQNGSLT
LKLKEGNVHLRMSTLPTINEESLVIRVMPQYNIPSIDKLSLFPKTGATLLSFLKHSHGMLIFTGPTGSGKTTTLYSLVQY
AKKHFNRNIVTLEDPVETRDEDVLQVQVNEKAGVTYSAGLKAILRHDPDMIILGEIRDAETAEIAVRAAMTGHLVLTSLH
TRDAKGAIYRLLEFGINMNEIEQTVIAIAAQRLVDLACPFCENGCSSVYCRQSRNTRRASVYELLYGKNLQQCIQEAKGN
HANYQYQTLRQIIRKGIALGYLTTNNYDRWVYHEKD

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=806442 P5622_RS12240 WP_004399124.1 2314107..2315177(+) (comGA) [Bacillus subtilis strain PRO115]
TTGGATTCAATAGAAAAGGTAAGCAAAAACTTGATTGAAGAGGCATATCTAACAAAGGCTTCTGATATTCACATTGTGCC
GAGGGAGCGGGACGCTATCATTCATTTTCGGGTCGATCATGCCTTGCTGAAAAAAAGGGACATGAAAAAAGAAGAGTGCG
TAAGACTGATTTCACATTTTAAATTTCTTTCAGCAATGGATATAGGTGAAAGGCGAAAGCCGCAAAACGGTTCGCTTACG
TTAAAGTTGAAAGAGGGAAATGTTCATTTAAGAATGTCAACGCTGCCCACAATTAATGAAGAAAGCCTCGTGATCAGAGT
GATGCCCCAATACAATATCCCTTCGATTGATAAATTGTCGCTATTTCCGAAGACAGGAGCCACATTACTCTCGTTTTTAA
AACATTCCCATGGCATGCTCATTTTTACCGGGCCGACTGGTTCAGGGAAGACTACCACATTATACTCTCTCGTTCAATAT
GCAAAAAAACACTTTAATCGAAATATTGTCACATTAGAGGACCCTGTTGAAACAAGGGACGAAGATGTTCTTCAGGTTCA
GGTGAATGAAAAAGCCGGTGTAACTTATTCCGCAGGTCTGAAAGCAATTTTGCGCCATGACCCCGATATGATTATTTTAG
GTGAGATCAGAGACGCGGAAACAGCTGAAATTGCGGTGCGGGCAGCGATGACGGGACATCTGGTACTAACGAGCCTTCAT
ACGAGAGACGCAAAGGGCGCAATTTACAGACTGCTTGAATTCGGTATCAATATGAATGAAATCGAACAGACTGTCATTGC
AATAGCGGCTCAGCGCTTGGTTGATTTGGCTTGCCCGTTTTGTGAAAACGGATGTTCATCAGTGTATTGCCGACAGTCAC
GAAATACTAGGAGAGCTAGCGTTTATGAGCTTCTATACGGGAAAAATCTTCAGCAATGTATCCAGGAGGCAAAAGGAAAT
CATGCAAATTACCAATATCAAACGCTTCGTCAAATTATCAGAAAAGGAATTGCGCTCGGCTATTTAACGACAAACAACTA
TGACCGGTGGGTTTATCATGAAAAAGATTAG

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(10-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A809FNW6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Bacillus subtilis subsp. subtilis str. 168

100

100

1