Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   P5622_RS11965 Genome accession   NZ_CP120598
Coordinates   2264469..2265236 (+) Length   255 a.a.
NCBI ID   WP_003230055.1    Uniprot ID   A0AAE2SJ05
Organism   Bacillus subtilis strain PRO115     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2259469..2270236
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P5622_RS11935 (P5622_11935) pgpH 2259765..2261900 (+) 2136 WP_010886570.1 cyclic-di-AMP phosphodiesterase PgpH -
  P5622_RS11940 (P5622_11940) ybeY 2261901..2262374 (+) 474 WP_003230039.1 rRNA maturation RNase YbeY -
  P5622_RS11945 (P5622_11945) unpK 2262355..2262726 (+) 372 WP_004398824.1 diacylglycerol kinase family protein -
  P5622_RS11950 (P5622_11950) cdd 2262845..2263255 (+) 411 WP_003230049.1 cytidine deaminase -
  P5622_RS11955 (P5622_11955) era 2263236..2264141 (+) 906 WP_003230051.1 GTPase Era -
  P5622_RS11960 (P5622_11960) yqzL 2264289..2264432 (+) 144 WP_003230053.1 YqzL family protein -
  P5622_RS11965 (P5622_11965) recO 2264469..2265236 (+) 768 WP_003230055.1 DNA repair protein RecO Machinery gene
  P5622_RS11970 (P5622_11970) glyQ 2265533..2266420 (+) 888 WP_003226213.1 glycine--tRNA ligase subunit alpha -
  P5622_RS11975 (P5622_11975) glyS 2266413..2268452 (+) 2040 WP_003230059.1 glycine--tRNA ligase subunit beta -
  P5622_RS11980 (P5622_11980) ccpN 2268585..2269223 (+) 639 WP_003237058.1 transcriptional regulator CcpN -
  P5622_RS11985 (P5622_11985) ppsR 2269249..2270061 (+) 813 WP_003230064.1 pyruvate, water dikinase regulatory protein -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29328.02 Da        Isoelectric Point: 8.3080

>NTDB_id=806441 P5622_RS11965 WP_003230055.1 2264469..2265236(+) (recO) [Bacillus subtilis strain PRO115]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGAKKPNSRLSAVSQPFLYGSFLMQKTSGLGTLQQGEMILSMRG
IREDLFLTAYAAYVAELVDRGTEEKKPNPYLFEFILESLKQLNEGTDPDVITFIVQMKMLGVMGLYPELNHCVHCKSQDG
TFHFSVRDNGFICHRCFEKDPYRIPIKPQTARLLRLFYYFDLSRLGNVSLKEETKAELKQVIDLYYEEYSGLYLKSKRFL
DQMESMKHLMGENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=806441 P5622_RS11965 WP_003230055.1 2264469..2265236(+) (recO) [Bacillus subtilis strain PRO115]
ATGCTGACAAAATGTGAAGGGATCGTTCTTCGCACAAATGATTACGGAGAGACGAATAAAATCGTAACATTACTGACAAG
AGAACACGGAAAAATAGGTGTTATGGCACGAGGCGCCAAAAAACCGAACAGCCGTTTATCAGCAGTCAGCCAGCCCTTTT
TGTATGGTTCTTTCTTAATGCAAAAAACATCGGGCCTCGGAACGCTTCAGCAGGGGGAAATGATCCTCAGCATGAGAGGC
ATCAGGGAAGACTTGTTTTTAACAGCATATGCTGCCTATGTTGCTGAGTTAGTCGACAGAGGCACAGAAGAAAAAAAGCC
AAATCCTTATTTATTTGAATTCATATTAGAATCATTAAAACAGTTGAATGAAGGAACAGATCCGGATGTTATCACCTTCA
TTGTTCAAATGAAGATGCTCGGTGTCATGGGCCTGTATCCTGAGCTGAATCATTGTGTACATTGTAAAAGCCAAGACGGA
ACCTTTCATTTCTCTGTTCGTGATAATGGTTTTATATGCCACCGCTGTTTTGAAAAAGATCCTTACAGGATACCGATTAA
ACCGCAAACGGCAAGGCTGTTAAGGCTCTTTTACTATTTTGATCTGTCGAGACTCGGCAATGTGTCCTTAAAAGAGGAAA
CAAAAGCTGAATTAAAGCAAGTGATTGATTTATATTACGAAGAATATTCGGGATTGTATTTAAAATCAAAGCGCTTTTTA
GATCAAATGGAAAGCATGAAACATCTTATGGGTGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-237)

Recombination protein O N terminal (RecO_N)

(1-75)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

100

100

1