Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilY2   Type   Machinery gene
Locus tag   RKQ58_RS02550 Genome accession   NZ_CP134579
Coordinates   340584..341012 (+) Length   142 a.a.
NCBI ID   WP_391485003.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain XH1034     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 335584..346012
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RKQ58_RS02515 (RKQ58_02515) - 335907..336158 (-) 252 Protein_308 hypothetical protein -
  RKQ58_RS02520 (RKQ58_02520) fimU 336064..336513 (+) 450 WP_114155191.1 GspH/FimT family pseudopilin Machinery gene
  RKQ58_RS02525 (RKQ58_02525) pilV 336510..337010 (+) 501 WP_004745401.1 type IV pilus modification protein PilV Machinery gene
  RKQ58_RS02530 (RKQ58_02530) pilW 337012..338049 (+) 1038 WP_216112386.1 PilW family protein Machinery gene
  RKQ58_RS02535 (RKQ58_02535) - 338046..338828 (+) 783 WP_031963609.1 pilus assembly PilX N-terminal domain-containing protein -
  RKQ58_RS02540 (RKQ58_02540) - 338844..339239 (+) 396 WP_228750160.1 hypothetical protein -
  RKQ58_RS02545 (RKQ58_02545) - 339272..340480 (-) 1209 WP_000343018.1 IS256-like element ISAba26 family transposase -
  RKQ58_RS02550 (RKQ58_02550) pilY2 340584..341012 (+) 429 WP_391485003.1 type IV pilin protein Machinery gene
  RKQ58_RS02555 (RKQ58_02555) pilE 341006..341470 (+) 465 WP_004745412.1 type IV pilin protein Machinery gene
  RKQ58_RS02560 (RKQ58_02560) rpsP 341618..341869 (+) 252 WP_000260334.1 30S ribosomal protein S16 -
  RKQ58_RS02565 (RKQ58_02565) rimM 341889..342437 (+) 549 WP_000189236.1 ribosome maturation factor RimM -
  RKQ58_RS02570 (RKQ58_02570) trmD 342483..343223 (+) 741 WP_000464598.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  RKQ58_RS02575 (RKQ58_02575) rplS 343432..343800 (+) 369 WP_000014562.1 50S ribosomal protein L19 -
  RKQ58_RS02580 (RKQ58_02580) - 343852..344793 (-) 942 WP_085943440.1 triacylglycerol lipase -
  RKQ58_RS02585 (RKQ58_02585) - 344908..345942 (-) 1035 WP_002091108.1 lipase secretion chaperone -

Sequence

Protein


Download         Length: 142 a.a.        Molecular weight: 15468.53 Da        Isoelectric Point: 9.3373

>NTDB_id=805847 RKQ58_RS02550 WP_391485003.1 340584..341012(+) (pilY2) [Acinetobacter baumannii strain XH1034]
MVVVVIVAIFAAVAIPSYQAYVLRADASRAEQEIQKISIQLNRHKSRNFNYKGFSTGAAASVILPVGATGDAVKYQITIR
DGDDTSKPLTDPTALGQNWVIRAEASDPYNFTYLFSSNGLRCKNKATSNVTYITCGTGAERW

Nucleotide


Download         Length: 429 bp        

>NTDB_id=805847 RKQ58_RS02550 WP_391485003.1 340584..341012(+) (pilY2) [Acinetobacter baumannii strain XH1034]
ATGGTTGTGGTGGTGATTGTTGCTATTTTTGCGGCAGTTGCAATACCTTCATATCAAGCCTATGTTTTGCGTGCGGATGC
TTCGCGCGCAGAACAGGAAATCCAGAAAATTTCCATACAGCTCAATCGTCATAAATCTAGAAATTTTAATTATAAAGGTT
TTTCTACAGGTGCTGCTGCGTCAGTAATTTTGCCTGTTGGAGCGACTGGTGATGCTGTTAAATATCAAATAACAATCCGA
GATGGTGATGATACTTCGAAACCTTTAACAGATCCTACAGCTTTAGGGCAAAACTGGGTAATTCGAGCAGAGGCTTCCGA
TCCTTATAATTTTACTTATTTATTTAGTAGTAATGGATTACGTTGTAAAAATAAAGCCACTAGCAATGTTACTTATATAA
CTTGTGGCACTGGAGCTGAGCGGTGGTAA

Domains

Predicted by InterProScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(16-84)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilY2 Acinetobacter baumannii D1279779

46

100

0.486
  comE Acinetobacter baylyi ADP1

36.806

100

0.373