Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   LLUC147_RS08955 Genome accession   NZ_CP120473
Coordinates   1787229..1788506 (-) Length   425 a.a.
NCBI ID   WP_396425195.1    Uniprot ID   -
Organism   Lactococcus cremoris strain UC147     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1782229..1793506
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LLUC147_RS08925 (LLUC147_08965) - 1782751..1782966 (-) 216 WP_014572212.1 F0F1 ATP synthase subunit C -
  LLUC147_RS08930 (LLUC147_08970) - 1783149..1783925 (-) 777 WP_014572211.1 alpha/beta hydrolase family protein -
  LLUC147_RS08935 (LLUC147_08975) - 1784209..1784514 (-) 306 Protein_1741 ComEC/Rec2 family competence protein -
  LLUC147_RS08940 (LLUC147_08980) - 1784535..1785425 (-) 891 WP_281634794.1 IS982-like element IS982B family transposase -
  LLUC147_RS08945 (LLUC147_08985) comEC 1785502..1786011 (-) 510 WP_021165649.1 MBL fold metallo-hydrolase Machinery gene
  LLUC147_RS08950 (LLUC147_08990) - 1786322..1787269 (+) 948 WP_003130410.1 IS30 family transposase -
  LLUC147_RS08955 (LLUC147_08995) comEC 1787229..1788506 (-) 1278 WP_396425195.1 ComEC/Rec2 family competence protein Machinery gene
  LLUC147_RS08960 (LLUC147_09000) comEA 1788487..1789068 (-) 582 WP_231097919.1 helix-hairpin-helix domain-containing protein Machinery gene
  LLUC147_RS08965 (LLUC147_09005) - 1789199..1790560 (-) 1362 WP_081196831.1 ABC transporter permease -
  LLUC147_RS08970 (LLUC147_09010) - 1790557..1791489 (-) 933 WP_014572202.1 ABC transporter ATP-binding protein -
  LLUC147_RS08975 (LLUC147_09015) - 1791595..1791993 (-) 399 WP_011676775.1 hypothetical protein -
  LLUC147_RS08980 (LLUC147_09020) - 1792085..1792669 (-) 585 WP_134047437.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 425 a.a.        Molecular weight: 49311.61 Da        Isoelectric Point: 9.7269

>NTDB_id=805791 LLUC147_RS08955 WP_396425195.1 1787229..1788506(-) (comEC) [Lactococcus cremoris strain UC147]
MRFLLIKFPLIFLTYLVVLLYFCIFTYNLPLLILFICSILLALFRKYYLMIPILIVFAVFFLLINSLSIRDNENQPKNLS
KIELIPDTIQVNGDLLSFQGRMNGQKYQVYDTLKSLKEKGFYQNLSQNCQLSFTGNLEIPETQRNFNGFDDQKYLTSQNI
YRQITIQQITNVEIKKNFDLHTLRRKAIVWTQNHFPKPMSDYMTGLLFGFLSKDFNQMSDIYSSLGIIHLFALSGMQVNF
FIDWFRKILLRMGLTRERVNLVQIPFSIFYAFMTGLSVSVLRALFQKNIRLTSLDNIAVTTLVLMLISPKFLLTTGGQLT
LFYAFVISMLNHPFSNLNGLKKVLTESSVLSLCVLPLLIFDFHIFQPISILLTIIFGFLFDFMLLPLLLCCFLISFLGFS
LNLNYIRKLQVQVSQPSSSHMNSYS

Nucleotide


Download         Length: 1278 bp        

>NTDB_id=805791 LLUC147_RS08955 WP_396425195.1 1787229..1788506(-) (comEC) [Lactococcus cremoris strain UC147]
ATGAGATTTCTATTGATTAAATTTCCCCTGATTTTTCTAACTTATCTTGTTGTGCTACTTTATTTTTGTATCTTTACTTA
CAATTTACCCTTGCTTATTTTATTTATTTGCTCAATTTTACTAGCTTTATTCAGAAAATATTATCTAATGATTCCGATAT
TAATTGTTTTTGCTGTATTTTTTCTGTTAATCAATAGTCTTAGTATTAGGGATAATGAAAATCAACCAAAAAATCTCTCA
AAAATTGAATTAATTCCAGATACAATCCAAGTCAATGGTGATTTATTGAGTTTTCAGGGGAGAATGAATGGACAAAAATA
TCAAGTCTATGACACATTGAAAAGTCTAAAAGAGAAAGGGTTTTATCAGAACTTAAGTCAAAATTGTCAGTTAAGTTTCA
CAGGAAACCTTGAAATACCAGAAACTCAGCGAAATTTTAATGGTTTTGATGACCAAAAATATTTAACTAGTCAAAATATC
TATCGACAGATTACCATCCAACAAATTACAAATGTGGAAATAAAAAAGAATTTTGACCTTCATACTTTAAGGCGAAAGGC
AATTGTTTGGACACAAAATCATTTTCCAAAACCGATGAGTGACTATATGACAGGTTTGCTTTTTGGCTTTTTAAGTAAGG
ATTTTAATCAGATGAGCGATATTTACAGCTCTTTAGGAATTATTCATCTTTTTGCTCTATCAGGAATGCAAGTAAATTTT
TTTATTGATTGGTTTCGTAAAATACTTCTTCGCATGGGACTGACGAGAGAAAGAGTGAATCTTGTTCAAATTCCATTTTC
TATTTTTTATGCTTTTATGACGGGATTATCGGTTTCAGTTTTAAGAGCCCTTTTTCAAAAAAATATTCGTCTGACTTCTT
TGGATAATATCGCAGTTACGACATTAGTTTTGATGCTCATAAGTCCAAAATTTTTACTGACGACTGGTGGTCAGCTTACC
TTGTTTTATGCTTTTGTCATTTCGATGCTTAATCATCCTTTTTCTAATTTAAATGGATTGAAAAAAGTGCTGACAGAATC
ATCAGTCCTTTCACTTTGTGTTCTTCCGTTACTCATCTTTGATTTCCATATTTTTCAGCCTATTTCAATATTATTAACAA
TTATATTTGGTTTTCTTTTTGATTTTATGTTGCTCCCGCTGCTTTTATGCTGTTTTCTTATATCATTTTTGGGATTTTCG
CTCAATTTAAATTATATTCGCAAATTGCAAGTCCAAGTTAGCCAGCCAAGCTCATCTCATATGAACTCTTATAGTTGA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(206-405)

Domain of unknown function (DUF4131) (DUF4131)

(27-171)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Lactococcus lactis subsp. cremoris KW2

97.291

95.529

0.929
  comEC/celB Streptococcus mitis SK321

45.232

96.235

0.435
  comEC/celB Streptococcus pneumoniae TIGR4

44.499

96.235

0.428
  comEC/celB Streptococcus mitis NCTC 12261

44.499

96.235

0.428
  comEC/celB Streptococcus pneumoniae Rx1

43.765

96.235

0.421
  comEC/celB Streptococcus pneumoniae D39

43.765

96.235

0.421
  comEC/celB Streptococcus pneumoniae R6

43.765

96.235

0.421