Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYC   Type   Machinery gene
Locus tag   P3T75_RS11830 Genome accession   NZ_CP120467
Coordinates   2460060..2460320 (-) Length   86 a.a.
NCBI ID   WP_282461697.1    Uniprot ID   -
Organism   Enterococcus montenegrensis strain CoE-012-22     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2455060..2465320
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P3T75_RS11795 (P3T75_11790) - 2455360..2456088 (-) 729 WP_230710369.1 GNAT family N-acetyltransferase -
  P3T75_RS11800 (P3T75_11795) - 2456177..2457358 (-) 1182 WP_206902183.1 acetate/propionate family kinase -
  P3T75_RS11805 (P3T75_11800) - 2457379..2458380 (-) 1002 WP_206902182.1 class I SAM-dependent methyltransferase -
  P3T75_RS11810 (P3T75_11805) comGG 2458568..2458951 (-) 384 WP_230710371.1 competence type IV pilus minor pilin ComGG -
  P3T75_RS11815 (P3T75_11810) comGF 2458929..2459348 (-) 420 WP_282461695.1 competence type IV pilus minor pilin ComGF -
  P3T75_RS11820 (P3T75_11815) - 2459338..2459649 (-) 312 WP_206902179.1 hypothetical protein -
  P3T75_RS11825 (P3T75_11820) comGD 2459630..2460055 (-) 426 WP_282461696.1 competence type IV pilus minor pilin ComGD -
  P3T75_RS11830 (P3T75_11825) comYC 2460060..2460320 (-) 261 WP_282461697.1 competence type IV pilus major pilin ComGC Machinery gene
  P3T75_RS11835 (P3T75_11830) comGB 2460408..2461421 (-) 1014 WP_282461698.1 competence type IV pilus assembly protein ComGB -
  P3T75_RS11840 (P3T75_11835) comGA 2461393..2462331 (-) 939 WP_282461699.1 competence type IV pilus ATPase ComGA -
  P3T75_RS11845 (P3T75_11840) trmB 2462562..2463221 (-) 660 WP_282461700.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  P3T75_RS11850 (P3T75_11845) - 2463308..2464087 (-) 780 WP_206903922.1 phosphotransferase family protein -

Sequence

Protein


Download         Length: 86 a.a.        Molecular weight: 9948.51 Da        Isoelectric Point: 4.8090

>NTDB_id=805756 P3T75_RS11830 WP_282461697.1 2460060..2460320(-) (comYC) [Enterococcus montenegrensis strain CoE-012-22]
MLVVLFIISILLLLFVPNLSQQKDEAQKGSEAAIVKTVATQIELYELNYDKKPTGEDLIEKNYVTKQQWEIYERHAEENS
PKKPMP

Nucleotide


Download         Length: 261 bp        

>NTDB_id=805756 P3T75_RS11830 WP_282461697.1 2460060..2460320(-) (comYC) [Enterococcus montenegrensis strain CoE-012-22]
ATGTTAGTTGTGTTATTTATTATTAGTATTTTATTGCTGCTTTTTGTACCCAATTTATCACAACAAAAAGATGAAGCACA
AAAAGGAAGTGAAGCGGCCATCGTTAAGACGGTTGCGACACAAATTGAATTGTATGAATTAAATTATGATAAAAAGCCTA
CGGGAGAAGATTTAATAGAAAAAAATTATGTCACAAAACAACAGTGGGAAATCTATGAAAGACATGCTGAAGAAAATAGT
CCAAAAAAGCCTATGCCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYC Streptococcus suis isolate S10

61.111

83.721

0.512
  comYC Streptococcus gordonii str. Challis substr. CH1

42.683

95.349

0.407
  comGC/cglC Streptococcus pneumoniae Rx1

41.25

93.023

0.384
  comGC/cglC Streptococcus pneumoniae D39

41.25

93.023

0.384
  comGC/cglC Streptococcus pneumoniae R6

41.25

93.023

0.384
  comGC/cglC Streptococcus pneumoniae TIGR4

41.25

93.023

0.384