Detailed information
Bioinformatically predicted
Overview
| Name | pilB | Type | Machinery gene |
| Locus tag | PVE91_RS14675 | Genome accession | NZ_CP120400 |
| Coordinates | 3206205..3207932 (-) | Length | 575 a.a. |
| NCBI ID | WP_053517028.1 | Uniprot ID | - |
| Organism | Stenotrophomonas maltophilia strain LH-B2 | ||
| Function | power the assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 3201205..3212932
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PVE91_RS14660 | sucC | 3201588..3202757 (-) | 1170 | WP_005418614.1 | ADP-forming succinate--CoA ligase subunit beta | - |
| PVE91_RS14665 | - | 3203088..3204707 (+) | 1620 | WP_053517024.1 | ATP-binding protein | - |
| PVE91_RS14670 | pilR | 3204762..3206135 (+) | 1374 | WP_053517026.1 | sigma-54 dependent transcriptional regulator | Regulator |
| PVE91_RS14675 | pilB | 3206205..3207932 (-) | 1728 | WP_053517028.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| PVE91_RS14680 | - | 3207944..3210991 (-) | 3048 | WP_277381036.1 | fused MFS/spermidine synthase | - |
| PVE91_RS14685 | - | 3211150..3211590 (-) | 441 | WP_277381037.1 | pilin | - |
Sequence
Protein
Download Length: 575 a.a. Molecular weight: 62221.22 Da Isoelectric Point: 6.0032
>NTDB_id=805504 PVE91_RS14675 WP_053517028.1 3206205..3207932(-) (pilB) [Stenotrophomonas maltophilia strain LH-B2]
MSVVSSPNLVGITGLARRLVQDGALDEATARDAMTRAAAARQPLPQWFAQNKVVGAAQLAAANAVEFGMPLFDVSTFDAS
QNAMSLVSEELLRKHNVLPLFKRGGKLFVGTSNPTHALDEIKFHTNLVVEPILVDEDQIRRTLEQWHASHDTLGDALGGD
DEGMANLDVGLGDEDGAGGDSGIDAKGDDTPVVKFVNKVLVDAIRKGASDIHFEPYEDDYRVRLRIDGLLKMVARAPVKL
NQRIAARLKVMAQLDIAEKRVPQDGRIKLNLSKSKQIDFRVSTLPTLFGEKVVLRILDGSAAKLGIDKLGYEPDQQKLFL
DAIHKPYGMVLVTGPTGSGKTVSLYTALGILNDETRNISTAEDPVEIRLPGVNQVQQNNKRGMTFAAALRSFLRQDPDII
MVGEIRDLETAEIAIKAAQTGHMVLSTLHTNDAPQTIARLMNMGIAPYNITSSVTLVIAQRLARRLCPNCKRPAQLPEHA
LLAEGFTQAQLDEGIQLHEAVGCDECTEGYKGRTGIYQVMPMTDEIATIVLAGGNALQIAEAAQAIGVNDLRQSALRKVA
AGVTSLAEINRVTKD
MSVVSSPNLVGITGLARRLVQDGALDEATARDAMTRAAAARQPLPQWFAQNKVVGAAQLAAANAVEFGMPLFDVSTFDAS
QNAMSLVSEELLRKHNVLPLFKRGGKLFVGTSNPTHALDEIKFHTNLVVEPILVDEDQIRRTLEQWHASHDTLGDALGGD
DEGMANLDVGLGDEDGAGGDSGIDAKGDDTPVVKFVNKVLVDAIRKGASDIHFEPYEDDYRVRLRIDGLLKMVARAPVKL
NQRIAARLKVMAQLDIAEKRVPQDGRIKLNLSKSKQIDFRVSTLPTLFGEKVVLRILDGSAAKLGIDKLGYEPDQQKLFL
DAIHKPYGMVLVTGPTGSGKTVSLYTALGILNDETRNISTAEDPVEIRLPGVNQVQQNNKRGMTFAAALRSFLRQDPDII
MVGEIRDLETAEIAIKAAQTGHMVLSTLHTNDAPQTIARLMNMGIAPYNITSSVTLVIAQRLARRLCPNCKRPAQLPEHA
LLAEGFTQAQLDEGIQLHEAVGCDECTEGYKGRTGIYQVMPMTDEIATIVLAGGNALQIAEAAQAIGVNDLRQSALRKVA
AGVTSLAEINRVTKD
Nucleotide
Download Length: 1728 bp
>NTDB_id=805504 PVE91_RS14675 WP_053517028.1 3206205..3207932(-) (pilB) [Stenotrophomonas maltophilia strain LH-B2]
ATGAGCGTTGTTTCATCCCCCAACCTTGTCGGCATCACCGGGCTGGCGCGCCGCCTGGTCCAGGATGGTGCGCTGGACGA
GGCCACCGCCCGCGACGCCATGACCCGGGCCGCCGCCGCGCGGCAGCCGCTGCCGCAGTGGTTCGCGCAGAACAAGGTGG
TGGGGGCAGCACAGCTGGCCGCGGCCAATGCGGTTGAGTTCGGCATGCCGCTGTTCGACGTCTCGACCTTCGATGCCAGC
CAGAACGCGATGAGCCTGGTCAGCGAGGAACTGCTGCGCAAGCACAACGTACTGCCGCTGTTCAAGCGTGGCGGCAAGCT
GTTCGTCGGCACCAGCAACCCGACCCACGCACTGGACGAGATCAAGTTCCACACCAACCTGGTGGTGGAGCCGATCCTGG
TCGACGAGGACCAGATCCGCCGCACTCTGGAACAGTGGCACGCCAGCCACGACACGCTGGGTGACGCGCTGGGCGGTGAC
GATGAGGGGATGGCCAACCTCGACGTGGGCCTGGGCGATGAGGATGGCGCGGGCGGCGACTCCGGCATCGATGCCAAGGG
CGACGACACCCCGGTGGTGAAGTTCGTCAACAAGGTGCTGGTCGATGCGATCCGCAAGGGCGCGTCGGACATCCATTTCG
AGCCGTACGAAGACGATTACCGCGTGCGCCTGCGCATCGATGGGCTGTTGAAGATGGTCGCGCGCGCGCCGGTGAAGTTG
AACCAGCGCATCGCTGCGCGCCTGAAGGTGATGGCGCAGCTGGACATCGCCGAGAAGCGCGTGCCGCAGGATGGCCGCAT
CAAGCTCAACCTGTCCAAGTCCAAGCAGATCGATTTCCGTGTGAGCACGTTGCCGACGCTGTTCGGCGAGAAGGTCGTGC
TGCGTATCCTCGACGGCAGTGCCGCCAAGCTGGGCATCGACAAGCTCGGCTATGAGCCCGACCAGCAGAAGCTGTTCCTG
GATGCGATCCACAAGCCGTACGGCATGGTGCTGGTGACCGGGCCGACCGGTTCGGGCAAGACGGTGTCGCTGTATACCGC
GCTGGGCATTCTCAACGACGAGACGCGCAACATCTCCACGGCGGAAGACCCGGTGGAAATCCGGCTGCCCGGCGTCAACC
AGGTGCAGCAGAACAACAAGCGCGGCATGACGTTCGCCGCTGCGTTGCGCTCGTTCCTGCGCCAGGATCCGGACATCATC
ATGGTCGGCGAAATCCGCGACCTGGAGACCGCCGAGATCGCCATCAAGGCCGCGCAGACCGGCCACATGGTGCTGTCCAC
CCTGCATACCAACGACGCGCCGCAGACCATCGCGCGCCTGATGAACATGGGCATCGCGCCGTACAACATCACCAGCTCGG
TGACCCTGGTGATCGCCCAGCGTCTGGCGCGACGGCTGTGCCCGAACTGCAAGCGCCCGGCGCAGCTGCCGGAGCATGCA
TTGCTGGCCGAGGGCTTCACCCAGGCCCAGCTGGATGAGGGCATCCAGCTGCATGAGGCGGTGGGCTGTGATGAATGCAC
CGAGGGTTACAAGGGCCGTACCGGTATCTACCAGGTGATGCCGATGACCGACGAGATCGCCACGATCGTGCTGGCCGGTG
GCAATGCGCTGCAGATTGCCGAAGCCGCGCAGGCGATCGGGGTCAATGACCTGCGGCAGTCGGCATTGAGGAAGGTCGCG
GCGGGCGTGACCAGCCTGGCCGAGATCAATCGCGTTACCAAGGATTGA
ATGAGCGTTGTTTCATCCCCCAACCTTGTCGGCATCACCGGGCTGGCGCGCCGCCTGGTCCAGGATGGTGCGCTGGACGA
GGCCACCGCCCGCGACGCCATGACCCGGGCCGCCGCCGCGCGGCAGCCGCTGCCGCAGTGGTTCGCGCAGAACAAGGTGG
TGGGGGCAGCACAGCTGGCCGCGGCCAATGCGGTTGAGTTCGGCATGCCGCTGTTCGACGTCTCGACCTTCGATGCCAGC
CAGAACGCGATGAGCCTGGTCAGCGAGGAACTGCTGCGCAAGCACAACGTACTGCCGCTGTTCAAGCGTGGCGGCAAGCT
GTTCGTCGGCACCAGCAACCCGACCCACGCACTGGACGAGATCAAGTTCCACACCAACCTGGTGGTGGAGCCGATCCTGG
TCGACGAGGACCAGATCCGCCGCACTCTGGAACAGTGGCACGCCAGCCACGACACGCTGGGTGACGCGCTGGGCGGTGAC
GATGAGGGGATGGCCAACCTCGACGTGGGCCTGGGCGATGAGGATGGCGCGGGCGGCGACTCCGGCATCGATGCCAAGGG
CGACGACACCCCGGTGGTGAAGTTCGTCAACAAGGTGCTGGTCGATGCGATCCGCAAGGGCGCGTCGGACATCCATTTCG
AGCCGTACGAAGACGATTACCGCGTGCGCCTGCGCATCGATGGGCTGTTGAAGATGGTCGCGCGCGCGCCGGTGAAGTTG
AACCAGCGCATCGCTGCGCGCCTGAAGGTGATGGCGCAGCTGGACATCGCCGAGAAGCGCGTGCCGCAGGATGGCCGCAT
CAAGCTCAACCTGTCCAAGTCCAAGCAGATCGATTTCCGTGTGAGCACGTTGCCGACGCTGTTCGGCGAGAAGGTCGTGC
TGCGTATCCTCGACGGCAGTGCCGCCAAGCTGGGCATCGACAAGCTCGGCTATGAGCCCGACCAGCAGAAGCTGTTCCTG
GATGCGATCCACAAGCCGTACGGCATGGTGCTGGTGACCGGGCCGACCGGTTCGGGCAAGACGGTGTCGCTGTATACCGC
GCTGGGCATTCTCAACGACGAGACGCGCAACATCTCCACGGCGGAAGACCCGGTGGAAATCCGGCTGCCCGGCGTCAACC
AGGTGCAGCAGAACAACAAGCGCGGCATGACGTTCGCCGCTGCGTTGCGCTCGTTCCTGCGCCAGGATCCGGACATCATC
ATGGTCGGCGAAATCCGCGACCTGGAGACCGCCGAGATCGCCATCAAGGCCGCGCAGACCGGCCACATGGTGCTGTCCAC
CCTGCATACCAACGACGCGCCGCAGACCATCGCGCGCCTGATGAACATGGGCATCGCGCCGTACAACATCACCAGCTCGG
TGACCCTGGTGATCGCCCAGCGTCTGGCGCGACGGCTGTGCCCGAACTGCAAGCGCCCGGCGCAGCTGCCGGAGCATGCA
TTGCTGGCCGAGGGCTTCACCCAGGCCCAGCTGGATGAGGGCATCCAGCTGCATGAGGCGGTGGGCTGTGATGAATGCAC
CGAGGGTTACAAGGGCCGTACCGGTATCTACCAGGTGATGCCGATGACCGACGAGATCGCCACGATCGTGCTGGCCGGTG
GCAATGCGCTGCAGATTGCCGAAGCCGCGCAGGCGATCGGGGTCAATGACCTGCGGCAGTCGGCATTGAGGAAGGTCGCG
GCGGGCGTGACCAGCCTGGCCGAGATCAATCGCGTTACCAAGGATTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilB | Acinetobacter baylyi ADP1 |
55.882 |
100 |
0.562 |
| pilB | Acinetobacter baumannii D1279779 |
56.79 |
98.609 |
0.56 |
| pilB | Legionella pneumophila strain ERS1305867 |
51.839 |
99.304 |
0.515 |
| pilB | Vibrio cholerae strain A1552 |
49.645 |
98.087 |
0.487 |
| pilF | Neisseria gonorrhoeae MS11 |
48.854 |
98.609 |
0.482 |
| pilB | Vibrio parahaemolyticus RIMD 2210633 |
46.06 |
99.304 |
0.457 |
| pilB | Vibrio campbellii strain DS40M4 |
45.694 |
98.957 |
0.452 |