Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   P3T65_RS04560 Genome accession   NZ_CP120376
Coordinates   987901..989391 (+) Length   496 a.a.
NCBI ID   WP_024762092.1    Uniprot ID   A0A6G6J605
Organism   Pseudomonas nitroreducens strain L4     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 982901..994391
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P3T65_RS04530 (P3T65_04530) - 983732..984424 (+) 693 WP_024762096.1 HAD family hydrolase -
  P3T65_RS04535 (P3T65_04535) sutA 984528..984860 (-) 333 WP_037011556.1 transcriptional regulator SutA -
  P3T65_RS04540 (P3T65_04540) - 984939..985364 (-) 426 WP_024762094.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  P3T65_RS04545 (P3T65_04545) - 985471..986805 (-) 1335 WP_037011554.1 ammonium transporter -
  P3T65_RS04550 (P3T65_04550) glnK 986847..987185 (-) 339 WP_003457590.1 P-II family nitrogen regulator -
  P3T65_RS04555 (P3T65_04555) - 987589..987861 (+) 273 WP_024762093.1 accessory factor UbiK family protein -
  P3T65_RS04560 (P3T65_04560) comM 987901..989391 (+) 1491 WP_024762092.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  P3T65_RS04565 (P3T65_04565) - 989388..989876 (-) 489 WP_024762091.1 RidA family protein -
  P3T65_RS04570 (P3T65_04570) - 989905..990135 (-) 231 WP_024762090.1 DUF1127 domain-containing protein -
  P3T65_RS04575 (P3T65_04575) - 990320..991768 (+) 1449 WP_038803555.1 PLP-dependent aminotransferase family protein -
  P3T65_RS04580 (P3T65_04580) - 991851..992654 (+) 804 WP_170859067.1 TlpA disulfide reductase family protein -
  P3T65_RS04585 (P3T65_04585) - 992805..993857 (-) 1053 WP_084358796.1 phosphorylcholine phosphatase -

Sequence

Protein


Download         Length: 496 a.a.        Molecular weight: 52713.56 Da        Isoelectric Point: 8.2014

>NTDB_id=805255 P3T65_RS04560 WP_024762092.1 987901..989391(+) (comM) [Pseudomonas nitroreducens strain L4]
MSLAIVHSRAQVGVEAPGVIVEAHLANGLPSLTLVGLPEGAVKESKDRVRSALLNAGFDFPNRRITLNLAPADLPKDGGR
FDLAIALGILAASGQLADAAGLDELECLGELALSGTLRPVPGVLPAALAARAAGRALVVPKENAEEASLASGLTVYAVGH
LLELAAHFSGQERLRPYEANGLMRVTPPYPDLSEVQGQAAAKRALLVAAAGAHNLLFSGPPGTGKTLLASRLPGLMPPLN
EDEALQVAAIHSVAGRGPLTHWPQRPFRQPHHTASAPALVGGGSRPQPGEITLAHEGVLFLDELPEFDRKVLEVLREPLE
GGEIVIARASGRVRFPARFQLVAAMNPCPCGYLGDPSGRCRCSPEQIQRYRAKLSGPLLDRIDLHLTVNRESTTLAPSGP
STSSAELATQVAAARQRQLARQGCANAFLTLKKMHQYCALSPEDQAWLEKAGERLNLSLRALHRILKVARTLADLQQEDR
IARPHLAEALQYRAGH

Nucleotide


Download         Length: 1491 bp        

>NTDB_id=805255 P3T65_RS04560 WP_024762092.1 987901..989391(+) (comM) [Pseudomonas nitroreducens strain L4]
ATGTCCCTCGCCATCGTCCATAGCCGCGCCCAGGTCGGCGTGGAAGCGCCCGGCGTCATCGTCGAGGCACACCTGGCCAA
CGGCCTGCCTTCCCTGACCCTGGTCGGCCTGCCCGAAGGCGCCGTGAAAGAGAGCAAGGACCGCGTGCGCAGCGCCCTGC
TCAACGCCGGCTTCGATTTCCCCAACCGACGCATCACCCTGAACCTCGCCCCGGCCGACCTGCCGAAGGATGGCGGGCGC
TTCGACCTGGCCATTGCCCTGGGCATCCTCGCCGCCAGCGGCCAATTGGCCGACGCTGCCGGGCTGGATGAACTGGAATG
CCTGGGCGAACTGGCGCTGTCCGGCACTTTGCGCCCGGTCCCCGGAGTACTACCCGCCGCCCTGGCTGCCCGCGCCGCCG
GCCGCGCCCTGGTGGTGCCGAAGGAGAACGCCGAAGAGGCCAGCCTCGCCAGCGGCCTGACCGTCTACGCCGTCGGCCAC
CTGCTGGAACTGGCCGCGCACTTCAGCGGCCAGGAGCGACTGCGTCCTTATGAGGCGAACGGCCTGATGCGGGTAACGCC
GCCCTATCCGGACCTGTCGGAAGTCCAGGGTCAGGCCGCCGCCAAGCGCGCGCTATTGGTCGCCGCTGCCGGGGCGCACA
ACCTGCTGTTCAGCGGTCCGCCCGGCACCGGCAAGACCCTGCTCGCCAGCCGCCTGCCCGGTCTGATGCCGCCGCTGAAC
GAAGACGAGGCATTGCAGGTTGCGGCGATCCATTCCGTGGCAGGTCGCGGGCCGCTGACTCACTGGCCACAGCGCCCCTT
CAGACAACCGCACCACACCGCCTCCGCACCGGCGCTGGTCGGCGGGGGAAGCCGCCCGCAGCCGGGCGAGATCACACTGG
CGCACGAGGGTGTGTTGTTCCTGGATGAATTGCCGGAGTTCGATCGCAAGGTCCTGGAGGTTCTCCGCGAACCGCTGGAA
GGGGGCGAAATTGTCATCGCCCGCGCCAGCGGCCGTGTGCGCTTCCCGGCACGCTTCCAGTTGGTGGCAGCGATGAACCC
CTGCCCCTGCGGCTATCTCGGCGACCCCAGCGGCCGTTGCCGCTGTTCGCCGGAACAGATCCAGCGCTACCGCGCCAAGC
TCTCCGGGCCGCTGCTGGACCGCATCGACCTGCACCTCACCGTCAACCGGGAAAGCACCACCCTTGCCCCCAGCGGGCCC
AGCACCAGCAGCGCGGAACTGGCCACTCAGGTCGCCGCTGCCCGCCAGCGCCAGCTCGCCCGCCAGGGCTGCGCGAACGC
GTTTCTTACGCTGAAGAAAATGCACCAATATTGTGCATTAAGCCCGGAAGACCAGGCCTGGCTGGAAAAGGCCGGCGAAC
GCCTGAACCTGTCACTGCGCGCCCTGCACCGGATTCTCAAGGTCGCCCGCACCCTTGCCGACCTGCAGCAGGAAGACCGC
ATCGCGCGCCCGCACCTGGCCGAAGCGCTGCAATACCGTGCGGGGCACTAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-143)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(191-392)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-493)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6G6J605

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

55.118

100

0.565
  comM Vibrio cholerae strain A1552

55.936

100

0.56
  comM Vibrio campbellii strain DS40M4

54.93

100

0.55
  comM Glaesserella parasuis strain SC1401

53.649

100

0.548
  comM Legionella pneumophila str. Paris

48.419

100

0.494
  comM Legionella pneumophila strain ERS1305867

48.419

100

0.494
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

47.421

100

0.482