Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   P3U44_RS07250 Genome accession   NZ_CP120180
Coordinates   1403013..1403279 (+) Length   88 a.a.
NCBI ID   WP_204236725.1    Uniprot ID   -
Organism   Mammaliicoccus sciuri strain Dog016     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1398013..1408279
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P3U44_RS07225 (P3U44_07230) - 1398268..1399635 (+) 1368 WP_323706030.1 N-acetylmuramoyl-L-alanine amidase -
  P3U44_RS07230 (P3U44_07235) - 1400348..1401454 (+) 1107 WP_323706031.1 hypothetical protein -
  P3U44_RS07235 (P3U44_07240) - 1401435..1402013 (+) 579 WP_323706032.1 hypothetical protein -
  P3U44_RS07240 (P3U44_07245) - 1402139..1402273 (-) 135 WP_258236944.1 hypothetical protein -
  P3U44_RS07245 (P3U44_07250) - 1402336..1402755 (-) 420 WP_323706226.1 YolD-like family protein -
  P3U44_RS07250 (P3U44_07255) comGC 1403013..1403279 (+) 267 WP_204236725.1 competence type IV pilus major pilin ComGC Machinery gene
  P3U44_RS07255 (P3U44_07260) - 1403308..1403706 (+) 399 WP_049319406.1 hypothetical protein -
  P3U44_RS07260 (P3U44_07265) - 1403750..1403971 (+) 222 WP_323706033.1 hypothetical protein -
  P3U44_RS07265 (P3U44_07270) - 1403946..1404380 (+) 435 WP_049318781.1 competence type IV pilus minor pilin ComGF -
  P3U44_RS07270 (P3U44_07275) - 1404615..1405103 (+) 489 WP_058611609.1 shikimate kinase -
  P3U44_RS07275 (P3U44_07280) gcvT 1405296..1406384 (+) 1089 WP_204253536.1 glycine cleavage system aminomethyltransferase GcvT -
  P3U44_RS07280 (P3U44_07285) gcvPA 1406396..1407739 (+) 1344 WP_058611607.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -

Sequence

Protein


Download         Length: 88 a.a.        Molecular weight: 9535.15 Da        Isoelectric Point: 6.4425

>NTDB_id=804251 P3U44_RS07250 WP_204236725.1 1403013..1403279(+) (comGC) [Mammaliicoccus sciuri strain Dog016]
MLIVLLIISILLVIIIPNISKQSETVKSTGCQAQVKMVAGQVEAYTLKHDAKPNSINDLISDGYINQKQLTCKSGETITL
ENGEVVAH

Nucleotide


Download         Length: 267 bp        

>NTDB_id=804251 P3U44_RS07250 WP_204236725.1 1403013..1403279(+) (comGC) [Mammaliicoccus sciuri strain Dog016]
ATGTTAATTGTCCTTTTAATCATAAGTATATTATTGGTGATCATCATACCAAACATCAGCAAGCAATCAGAGACGGTAAA
AAGTACTGGATGCCAAGCACAAGTGAAAATGGTAGCTGGTCAAGTAGAAGCTTATACATTGAAACACGATGCTAAACCAA
ATTCTATAAATGATTTAATAAGTGATGGCTATATTAACCAAAAGCAACTGACTTGTAAATCAGGAGAAACAATTACGCTA
GAAAACGGTGAAGTTGTTGCACATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Staphylococcus aureus MW2

63.889

81.818

0.523
  comGC Staphylococcus aureus N315

63.889

81.818

0.523
  comGC Bacillus subtilis subsp. subtilis str. 168

44.706

96.591

0.432
  comYC Streptococcus mutans UA140

48.571

79.545

0.386
  comYC Streptococcus mutans UA159

48.571

79.545

0.386
  comGC Lactococcus lactis subsp. cremoris KW2

45.833

81.818

0.375
  comYC Streptococcus gordonii str. Challis substr. CH1

46.377

78.409

0.364