Detailed information    

insolico Bioinformatically predicted

Overview

Name   cclA/cilC   Type   Machinery gene
Locus tag   RJW53_RS02245 Genome accession   NZ_CP134488
Coordinates   429005..429556 (-) Length   183 a.a.
NCBI ID   WP_311047960.1    Uniprot ID   -
Organism   Streptococcus suis strain NLS50     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 424005..434556
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJW53_RS02230 (RJW53_02230) - 424777..425304 (+) 528 WP_012027591.1 VanZ family protein -
  RJW53_RS02235 (RJW53_02235) nadE 426600..427424 (-) 825 WP_004194617.1 ammonia-dependent NAD(+) synthetase -
  RJW53_RS02240 (RJW53_02240) - 427437..428897 (-) 1461 WP_012027590.1 nicotinate phosphoribosyltransferase -
  RJW53_RS02245 (RJW53_02245) cclA/cilC 429005..429556 (-) 552 WP_311047960.1 prepilin peptidase Machinery gene
  RJW53_RS02250 (RJW53_02250) - 429619..431340 (-) 1722 WP_074389404.1 IS1634 family transposase -
  RJW53_RS02255 (RJW53_02255) cclA/cilC 431491..432135 (-) 645 WP_012027589.1 A24 family peptidase Machinery gene
  RJW53_RS02260 (RJW53_02260) - 432257..432811 (+) 555 WP_004194627.1 class I SAM-dependent methyltransferase -
  RJW53_RS02265 (RJW53_02265) - 432827..433606 (-) 780 WP_012027588.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 20840.34 Da        Isoelectric Point: 8.7798

>NTDB_id=804080 RJW53_RS02245 WP_311047960.1 429005..429556(-) (cclA/cilC) [Streptococcus suis strain NLS50]
MIKSGNACKRRLKAWDLIPVLSQLSTKSKCRYCKAKIPYWYLGLEFLAGLVVLLCHFQVLNLTETILILAGLVLTIYDIK
HQEYPFAVWLIFTFIALILSQLNWLFCGFLLLAYLTEKWQINIGSGDFLYLASLALICGFTELLWIIQISSLLGLLVFAI
FKPKSIPYVPLLFLSSIPIILCT

Nucleotide


Download         Length: 552 bp        

>NTDB_id=804080 RJW53_RS02245 WP_311047960.1 429005..429556(-) (cclA/cilC) [Streptococcus suis strain NLS50]
GTGATAAAGTCGGGCAATGCCTGCAAACGACGGCTCAAGGCCTGGGACTTAATTCCAGTCCTATCCCAGCTTTCGACAAA
ATCCAAATGCCGTTACTGCAAGGCGAAGATACCTTATTGGTATCTGGGATTGGAATTCTTAGCCGGTCTAGTTGTCCTGC
TCTGCCATTTTCAAGTCCTAAACCTAACCGAAACCATTCTCATCTTGGCAGGACTAGTTTTGACCATTTACGACATCAAG
CATCAGGAATATCCTTTTGCTGTCTGGCTCATTTTTACTTTTATAGCTCTGATACTCTCCCAGCTCAACTGGCTTTTCTG
TGGCTTTTTACTCTTGGCCTATCTGACTGAAAAATGGCAAATCAATATTGGTTCTGGTGACTTTCTCTATCTGGCAAGTT
TGGCCTTAATATGTGGATTTACAGAACTCCTCTGGATTATCCAGATTAGTTCCCTCCTAGGGCTTCTTGTCTTCGCCATT
TTCAAACCCAAGTCTATTCCCTACGTACCACTCCTATTTCTTTCAAGTATTCCTATCATTCTGTGCACCTAA

Domains

Predicted by InterProScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(6-57)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cclA/cilC Streptococcus mitis SK321

46.023

96.175

0.443
  cclA/cilC Streptococcus pneumoniae Rx1

45.455

96.175

0.437
  cclA/cilC Streptococcus pneumoniae D39

45.455

96.175

0.437
  cclA/cilC Streptococcus pneumoniae R6

45.455

96.175

0.437
  cclA/cilC Streptococcus pneumoniae TIGR4

44.318

96.175

0.426
  cclA/cilC Streptococcus mitis NCTC 12261

41.477

96.175

0.399