Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   RJW49_RS00765 Genome accession   NZ_CP134477
Coordinates   124406..124813 (+) Length   135 a.a.
NCBI ID   WP_014735291.1    Uniprot ID   -
Organism   Streptococcus suis strain NLS40     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 119406..129813
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJW49_RS00740 (RJW49_00740) - 120811..121176 (+) 366 WP_014735287.1 DUF1033 family protein -
  RJW49_RS00745 (RJW49_00745) - 121211..122161 (-) 951 WP_014735288.1 S66 peptidase family protein -
  RJW49_RS00750 (RJW49_00750) comGA 122247..123193 (+) 947 Protein_113 competence type IV pilus ATPase ComGA -
  RJW49_RS00755 (RJW49_00755) comGB 123105..124142 (+) 1038 WP_268739958.1 competence type IV pilus assembly protein ComGB Machinery gene
  RJW49_RS00760 (RJW49_00760) comGC 124144..124425 (+) 282 WP_074412254.1 competence type IV pilus major pilin ComGC Machinery gene
  RJW49_RS00765 (RJW49_00765) comGD 124406..124813 (+) 408 WP_014735291.1 competence type IV pilus minor pilin ComGD Machinery gene
  RJW49_RS00770 (RJW49_00770) comGE 124785..125078 (+) 294 WP_024405248.1 competence type IV pilus minor pilin ComGE Machinery gene
  RJW49_RS00775 (RJW49_00775) comGF/cglF 125065..125499 (+) 435 WP_014735293.1 competence type IV pilus minor pilin ComGF Machinery gene
  RJW49_RS00780 (RJW49_00780) comGG 125477..125998 (+) 522 WP_014735294.1 competence type IV pilus minor pilin ComGG -
  RJW49_RS00785 (RJW49_00785) comGH 126055..127008 (+) 954 WP_074393516.1 class I SAM-dependent methyltransferase Machinery gene
  RJW49_RS00790 (RJW49_00790) - 127058..128245 (+) 1188 WP_012775422.1 acetate kinase -
  RJW49_RS00795 (RJW49_00795) - 128560..129111 (+) 552 WP_012774908.1 folate family ECF transporter S component -

Sequence

Protein


Download         Length: 135 a.a.        Molecular weight: 15300.52 Da        Isoelectric Point: 9.7340

>NTDB_id=803874 RJW49_RS00765 WP_014735291.1 124406..124813(+) (comGD) [Streptococcus suis strain NLS40]
MLRRKNKAFTLFESLLTLLVVSFLAVSLSGTVQTVFQSVQEEIFLWEFEAVYKDSQKLAASSHQSVSLTIGEQEVTNGHQ
MVKVPRSVEVLEGKTITFEENGGNSSLTKIRFRLSRKTVTYQLYIGSGRYKKTEE

Nucleotide


Download         Length: 408 bp        

>NTDB_id=803874 RJW49_RS00765 WP_014735291.1 124406..124813(+) (comGD) [Streptococcus suis strain NLS40]
ATGCTACGGCGAAAAAATAAGGCCTTCACCCTGTTTGAAAGTCTGCTGACCTTGTTGGTTGTCAGTTTTTTAGCTGTTTC
CTTATCAGGAACAGTACAAACGGTCTTTCAGTCTGTTCAGGAAGAAATTTTTCTCTGGGAATTTGAAGCCGTTTACAAAG
ACAGTCAGAAATTGGCTGCTAGTTCTCACCAGTCAGTTAGCCTGACTATCGGCGAACAAGAAGTGACAAATGGTCATCAG
ATGGTGAAAGTACCTAGAAGTGTAGAAGTATTAGAAGGGAAGACCATCACATTTGAAGAAAATGGAGGAAATTCTTCTCT
GACCAAGATTCGTTTTCGGCTTAGTCGAAAGACAGTCACATATCAATTATATATAGGGAGTGGTCGCTATAAGAAAACAG
AAGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Streptococcus mutans UA140

48.062

95.556

0.459
  comGD Streptococcus mutans UA159

48.062

95.556

0.459
  comGD/cglD Streptococcus pneumoniae D39

46.512

95.556

0.444
  comGD/cglD Streptococcus pneumoniae R6

46.512

95.556

0.444
  comGD/cglD Streptococcus pneumoniae Rx1

46.512

95.556

0.444
  comGD/cglD Streptococcus pneumoniae TIGR4

46.512

95.556

0.444
  comGD Streptococcus gordonii str. Challis substr. CH1

46.457

94.074

0.437
  comGD/cglD Streptococcus mitis NCTC 12261

45.736

95.556

0.437
  comGD/cglD Streptococcus mitis SK321

45.736

95.556

0.437
  comGD Lactococcus lactis subsp. cremoris KW2

39.062

94.815

0.37