Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvB   Type   Machinery gene
Locus tag   RJW49_RS00310 Genome accession   NZ_CP134477
Coordinates   53029..54030 (+) Length   333 a.a.
NCBI ID   WP_014735241.1    Uniprot ID   -
Organism   Streptococcus suis strain NLS40     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 48029..59030
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJW49_RS00300 (RJW49_00300) purB 50871..52163 (+) 1293 WP_014735227.1 adenylosuccinate lyase -
  RJW49_RS00305 (RJW49_00305) tnpA 52354..52867 (+) 514 Protein_40 IS200/IS605 family transposase -
  RJW49_RS00310 (RJW49_00310) ruvB 53029..54030 (+) 1002 WP_014735241.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  RJW49_RS00315 (RJW49_00315) - 54098..54733 (+) 636 WP_014735242.1 HAD-IA family hydrolase -
  RJW49_RS00320 (RJW49_00320) comR 54980..55879 (+) 900 WP_044678694.1 helix-turn-helix domain-containing protein Regulator
  RJW49_RS00325 (RJW49_00325) - 56305..57507 (+) 1203 WP_079759536.1 IS110 family transposase -
  RJW49_RS00330 (RJW49_00330) - 58062..58999 (-) 938 Protein_45 IS4 family transposase -

Sequence

Protein


Download         Length: 333 a.a.        Molecular weight: 37657.17 Da        Isoelectric Point: 4.4708

>NTDB_id=803862 RJW49_RS00310 WP_014735241.1 53029..54030(+) (ruvB) [Streptococcus suis strain NLS40]
MTNRILDMEQMQDEEYVERTLRPQKLNEYIGQDKVKDQLKIFIEAAKLRDEALDHTLLFGPPGLGKTTMAFVIANELGVN
IKQTSGPVIEKAGDLVALLNDLEPGDVLFIDEIHRMPMAVEEILYSAMEDFYIDIMIGAGEASRSVHLELPPFTLIGATT
RAGMLSNPLRARFGITGHMEYYELSDLTEIVERTADIFEMEITHEAAIELARRSRGTPRIANRLLKRVRDFAQIMGDGLI
DDTITDKALTMLDVDREGLDYVDQKILRTMIEMYGGGPVGLNTLSVNIAEERETVEDMYEPYLIQQGFLMRTRTGRVATA
KAYEHLGYPYTEK

Nucleotide


Download         Length: 1002 bp        

>NTDB_id=803862 RJW49_RS00310 WP_014735241.1 53029..54030(+) (ruvB) [Streptococcus suis strain NLS40]
ATGACAAATCGAATTTTAGATATGGAACAAATGCAGGACGAGGAGTATGTTGAGCGTACCCTGCGTCCACAGAAATTGAA
TGAGTACATCGGTCAGGACAAGGTTAAGGACCAGCTGAAAATCTTTATCGAGGCAGCCAAGCTCCGTGATGAAGCCTTGG
ACCATACCCTTCTGTTTGGACCTCCAGGTTTGGGGAAGACCACCATGGCTTTTGTCATCGCCAACGAACTGGGCGTTAAT
ATCAAGCAGACTAGTGGTCCTGTTATTGAAAAAGCAGGTGACTTGGTGGCCCTTCTCAACGACTTGGAGCCTGGTGACGT
CCTCTTTATCGATGAAATCCACCGTATGCCCATGGCGGTCGAGGAGATTCTCTACTCAGCCATGGAAGATTTCTACATCG
ACATCATGATTGGAGCAGGGGAGGCCAGTCGCTCCGTACATTTGGAGTTGCCACCTTTTACCCTGATTGGAGCGACCACT
CGTGCGGGTATGCTGTCCAATCCTCTGCGGGCCCGTTTTGGGATTACCGGTCACATGGAATACTACGAACTGTCTGATTT
GACGGAGATTGTCGAGCGGACAGCGGACATCTTTGAGATGGAGATTACCCATGAAGCTGCTATTGAGCTGGCTCGTCGTT
CCCGTGGGACCCCTCGTATCGCCAACCGCCTGCTCAAGCGGGTGAGGGATTTCGCACAGATTATGGGCGATGGTCTGATT
GATGACACCATTACAGATAAGGCCCTAACCATGCTGGATGTGGACCGCGAGGGGCTGGACTACGTGGACCAGAAGATTCT
CCGCACCATGATTGAGATGTACGGTGGCGGTCCTGTCGGTCTTAACACCCTGTCGGTCAATATCGCTGAAGAGCGTGAAA
CAGTGGAAGACATGTACGAACCTTACCTGATTCAGCAGGGCTTCCTCATGCGGACGCGGACAGGTCGGGTCGCGACAGCT
AAGGCTTACGAGCACTTGGGTTATCCCTATACGGAAAAATAA

Domains

Predicted by InterProScan.

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(21-179)

RuvB C-terminal winged helix domain (WHD_RuvB)

(257-326)

RuvB AAA lid domain (AAA_lid_4)

(182-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvB Streptococcus pneumoniae TIGR4

90.332

99.399

0.898
  ruvB Streptococcus pneumoniae R6

90.03

99.399

0.895
  ruvB Streptococcus pneumoniae D39

90.03

99.399

0.895
  ruvB Bacillus subtilis subsp. subtilis str. 168

58.896

97.898

0.577
  ruvB Helicobacter pylori 26695

51.368

98.799

0.508
  ruvB Synechocystis sp. PCC 6803

50.479

93.994

0.474