Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   P3U46_RS06310 Genome accession   NZ_CP120148
Coordinates   1251405..1253795 (+) Length   796 a.a.
NCBI ID   WP_206166237.1    Uniprot ID   -
Organism   Mammaliicoccus sciuri strain Dog029_2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1246405..1258795
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P3U46_RS06290 (P3U46_06290) sal(A) 1246712..1248337 (+) 1626 WP_216698585.1 ABC-F type ribosomal protection protein Sal(A) -
  P3U46_RS06295 (P3U46_06295) - 1248397..1249545 (+) 1149 WP_216698584.1 cysteine desulfurase family protein -
  P3U46_RS06300 (P3U46_06300) mnmA 1249538..1250647 (+) 1110 WP_049318720.1 tRNA 2-thiouridine(34) synthase MnmA -
  P3U46_RS06305 (P3U46_06305) - 1250734..1251402 (+) 669 WP_058611664.1 tetratricopeptide repeat protein -
  P3U46_RS06310 (P3U46_06310) recD2 1251405..1253795 (+) 2391 WP_206166237.1 ATP-dependent RecD-like DNA helicase Machinery gene
  P3U46_RS06315 (P3U46_06315) alaS 1254045..1256675 (+) 2631 WP_204237351.1 alanine--tRNA ligase -
  P3U46_RS06320 (P3U46_06320) - 1256743..1257012 (+) 270 WP_037588397.1 IreB family regulatory phosphoprotein -
  P3U46_RS06325 (P3U46_06325) ruvX 1257005..1257433 (+) 429 WP_025904238.1 Holliday junction resolvase RuvX -
  P3U46_RS06330 (P3U46_06330) - 1257453..1257758 (+) 306 WP_025904237.1 DUF1292 domain-containing protein -

Sequence

Protein


Download         Length: 796 a.a.        Molecular weight: 90365.44 Da        Isoelectric Point: 4.5759

>NTDB_id=803773 P3U46_RS06310 WP_206166237.1 1251405..1253795(+) (recD2) [Mammaliicoccus sciuri strain Dog029_2]
MENLSLFDLSHVKGEVIRILFQNSDNYYTVIKVDVMDSNEDFDQEVTIVGYLPQIVEGETYLFKGKVTNHPKYGKQLQAE
TFEKELPQTKQGVIHYLSSDLFKGIGKKTAETIVDKLGEDALQKIIDDPDVLKEIPKLNKQKRDTIAESIRENQAIEHIM
IKLNELGFGPKLAMAIYQFYKEETLNIIKQSPYRLVMDINGIGFQRADQIAEQVGISKDHHDRLVAGVSYFLDQQSLQNG
HTFLPVDILTNGAYELLNHNQPEVVNKDQINGVIIEMSEENKLIIENDNCFLPSLYYSEAKSVQIIHRLYQHQDELKEIE
KSDLQLHIGQIEDMNDVSYADGQKLALETAINHKMMLLTGGPGTGKTTVIQGICELYSEIHGVSLNYDDYQEGTDFPIVL
AAPTGRAAKRLSESTGLEAMTIHRLIGWSKDTQPDDVLDNDIHAHLIILDEMSMVDTWLMYQFLRAVPDYAQIIFVGDED
QLPSVGPGQIFKDLIDSKVIPRVNLTEVYRQQEGSSIIDLAHKIKNGLPVSINEKHHDRSFIPCSSNQIATVVEKVVQGA
VNKGYNMQDIQVLAPIYRGPAGINKLNELLQDILNPKDEDTRFLQYGDIEYRENDKVLQLINRPDDNVFNGDIGVVTGVY
KAEENALGKDVVIVDYEGNDITYTKQDLSEITHAYCCSIHKSQGSEFPIVIMPIVRQYFRMLQKNILYTGLTRAKQSLVV
CGEEQAFNQGIQTLGHERMTSFDTKLKMYFDTDVESDTESETESIQTKHIILTEDNMFEIDPMINMNDKTPYDFMK

Nucleotide


Download         Length: 2391 bp        

>NTDB_id=803773 P3U46_RS06310 WP_206166237.1 1251405..1253795(+) (recD2) [Mammaliicoccus sciuri strain Dog029_2]
TTGGAAAACTTATCTTTATTTGATCTTTCACATGTAAAAGGTGAAGTTATTAGAATTCTTTTTCAAAACAGTGATAACTA
TTATACCGTTATTAAAGTCGATGTGATGGATTCAAATGAAGATTTTGATCAAGAAGTCACAATTGTTGGTTACTTACCTC
AAATAGTTGAAGGAGAAACGTACCTTTTCAAAGGTAAAGTAACAAACCATCCGAAATACGGTAAACAACTACAAGCTGAA
ACTTTTGAAAAAGAATTACCACAAACAAAACAAGGTGTTATTCATTACTTATCGAGTGATTTATTTAAAGGTATTGGTAA
GAAAACAGCAGAAACAATCGTGGACAAACTAGGTGAAGATGCACTTCAGAAAATTATAGATGACCCAGATGTCCTTAAAG
AAATACCTAAACTTAACAAGCAAAAAAGAGATACGATTGCAGAATCAATACGTGAGAATCAAGCCATTGAACATATTATG
ATTAAACTTAATGAACTTGGTTTCGGTCCGAAACTCGCGATGGCTATTTATCAATTTTATAAAGAAGAAACACTTAATAT
TATTAAACAATCTCCATATCGTTTGGTGATGGATATAAATGGTATAGGGTTTCAAAGAGCTGACCAAATAGCCGAACAAG
TTGGAATTTCTAAAGATCATCATGATCGACTTGTAGCAGGTGTCAGTTACTTTTTAGACCAGCAATCATTACAGAATGGT
CACACATTTTTACCTGTTGATATATTGACCAATGGGGCATATGAATTGTTAAATCATAATCAACCCGAAGTTGTGAATAA
AGATCAGATTAATGGTGTCATTATAGAGATGAGTGAAGAAAATAAACTTATTATCGAAAATGATAATTGTTTTTTACCTT
CACTTTATTATTCAGAAGCGAAAAGTGTGCAAATTATTCATAGGCTTTATCAACATCAAGATGAACTTAAAGAAATTGAA
AAAAGTGATCTTCAATTACACATTGGTCAAATTGAAGATATGAATGATGTTTCATATGCAGATGGCCAAAAATTAGCGTT
AGAAACAGCCATTAATCATAAAATGATGCTTTTAACAGGTGGACCTGGAACAGGTAAGACGACAGTTATTCAAGGCATTT
GTGAGTTGTATTCTGAAATACACGGTGTGAGTTTAAATTATGATGATTACCAAGAAGGAACGGACTTTCCAATTGTATTA
GCAGCACCGACTGGACGTGCAGCCAAAAGACTAAGTGAATCTACTGGACTAGAAGCGATGACGATTCATAGATTAATTGG
ATGGAGTAAAGATACACAACCTGATGATGTGTTAGATAATGACATACATGCCCATTTAATCATTCTAGATGAAATGTCTA
TGGTAGATACATGGTTGATGTATCAATTTTTAAGAGCAGTCCCTGATTATGCTCAAATCATATTTGTAGGTGACGAAGAT
CAATTACCATCAGTTGGTCCAGGTCAGATTTTTAAAGATTTAATTGATTCTAAAGTGATACCGAGAGTGAACTTAACAGA
AGTTTATAGACAACAAGAAGGATCATCCATCATAGATTTAGCGCATAAAATAAAAAATGGATTGCCTGTTTCTATTAATG
AAAAACATCACGACCGCTCATTTATTCCTTGCAGTAGTAATCAAATTGCGACAGTTGTAGAAAAGGTCGTACAAGGTGCT
GTTAATAAAGGATATAATATGCAAGATATTCAAGTGCTAGCTCCAATATACCGTGGACCAGCAGGTATTAATAAATTAAA
TGAATTATTGCAAGATATATTAAATCCGAAAGATGAAGATACAAGATTTCTTCAATATGGAGATATTGAATATCGTGAAA
ATGATAAAGTACTTCAACTTATTAATCGTCCAGATGATAATGTATTTAATGGTGATATTGGTGTAGTGACGGGTGTTTAT
AAAGCAGAAGAAAATGCACTTGGTAAAGATGTCGTCATTGTAGATTATGAAGGGAATGACATAACATACACTAAACAAGA
TTTATCAGAAATTACACATGCTTATTGTTGTTCAATTCATAAATCACAAGGGTCGGAATTCCCGATAGTCATCATGCCTA
TTGTCAGACAATACTTTAGAATGTTACAAAAAAACATTCTATATACCGGACTTACACGTGCGAAGCAGTCGCTTGTTGTG
TGCGGTGAAGAACAAGCCTTTAATCAAGGTATCCAAACGCTAGGTCATGAGAGAATGACATCGTTTGATACGAAATTAAA
AATGTATTTCGATACTGATGTTGAATCGGATACTGAGTCTGAAACAGAATCTATTCAAACGAAACATATTATTTTAACTG
AAGATAATATGTTTGAAATCGATCCGATGATTAATATGAATGATAAAACACCATATGATTTTATGAAATAA

Domains

Predicted by InterproScan.

AAA domain (AAA_30)

(339-545)

Helix-hairpin-helix containing domain (HHH_RecD2)

(152-243)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(673-721)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(586-644)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

49.627

100

0.501