Detailed information
Bioinformatically predicted
Overview
| Name | comGA | Type | Machinery gene |
| Locus tag | P3U46_RS06740 | Genome accession | NZ_CP120148 |
| Coordinates | 1328445..1329347 (+) | Length | 300 a.a. |
| NCBI ID | WP_323707842.1 | Uniprot ID | - |
| Organism | Mammaliicoccus sciuri strain Dog029_2 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1323445..1334347
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| P3U46_RS06700 (P3U46_06700) | - | 1323529..1324083 (+) | 555 | WP_058611616.1 | 5-formyltetrahydrofolate cyclo-ligase | - |
| P3U46_RS06705 (P3U46_06705) | - | 1324084..1325532 (+) | 1449 | WP_323707841.1 | rhomboid family intramembrane serine protease | - |
| P3U46_RS06710 (P3U46_06710) | - | 1325537..1325728 (+) | 192 | WP_078099923.1 | YqgQ family protein | - |
| P3U46_RS06715 (P3U46_06715) | - | 1325725..1326696 (+) | 972 | WP_025904167.1 | ROK family glucokinase | - |
| P3U46_RS06720 (P3U46_06720) | - | 1326696..1327010 (+) | 315 | WP_058611614.1 | MTH1187 family thiamine-binding protein | - |
| P3U46_RS06725 (P3U46_06725) | - | 1327040..1327279 (-) | 240 | WP_016911885.1 | DUF2759 domain-containing protein | - |
| P3U46_RS06730 (P3U46_06730) | - | 1327377..1328009 (+) | 633 | WP_058611613.1 | MBL fold metallo-hydrolase | - |
| P3U46_RS06735 (P3U46_06735) | - | 1328043..1328291 (-) | 249 | WP_025904960.1 | DUF2626 family protein | - |
| P3U46_RS06740 (P3U46_06740) | comGA | 1328445..1329347 (+) | 903 | WP_323707842.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| P3U46_RS06745 (P3U46_06745) | comGB | 1329337..1330377 (+) | 1041 | WP_077152202.1 | competence type IV pilus assembly protein ComGB | - |
| P3U46_RS06750 (P3U46_06750) | comGC | 1330392..1330709 (+) | 318 | WP_058611611.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| P3U46_RS06755 (P3U46_06755) | - | 1330738..1331136 (+) | 399 | WP_049319406.1 | hypothetical protein | - |
| P3U46_RS06760 (P3U46_06760) | comGE | 1331120..1331401 (+) | 282 | WP_058611610.1 | competence type IV pilus minor pilin ComGE | - |
| P3U46_RS06765 (P3U46_06765) | - | 1331376..1331810 (+) | 435 | WP_049318781.1 | competence type IV pilus minor pilin ComGF | - |
| P3U46_RS06770 (P3U46_06770) | - | 1332045..1332533 (+) | 489 | WP_058611609.1 | shikimate kinase | - |
| P3U46_RS06775 (P3U46_06775) | gcvT | 1332726..1333814 (+) | 1089 | WP_058611608.1 | glycine cleavage system aminomethyltransferase GcvT | - |
Sequence
Protein
Download Length: 300 a.a. Molecular weight: 34409.29 Da Isoelectric Point: 6.1198
>NTDB_id=803775 P3U46_RS06740 WP_323707842.1 1328445..1329347(+) (comGA) [Mammaliicoccus sciuri strain Dog029_2]
MEKLFKSIINDAVNSNASDIHFVPLNDDKVFVQMRINGDNIPYDLDLDFNLYSRLLIYMKFIAHLDVSERNKAQSGQYLF
EHDIHYYLRISTIPISLGIESSSIRITTQHFNHSQVKSEHQSYNVLQNRMYQSEGLFLFTGPTGSGKTTLMYELMYALKR
EKNKHIITIEDPVEQTLNGIVQVSVNEKANITYQQSFKAILRCDPDVIMIGEIRDDITAKQVIQASLSGHLVLSTMHASD
TIGAIHRLVELGVTVEQIKQGISCITNQRLVKKCDEARTLDMSYIFKDDIIKYMENDYET
MEKLFKSIINDAVNSNASDIHFVPLNDDKVFVQMRINGDNIPYDLDLDFNLYSRLLIYMKFIAHLDVSERNKAQSGQYLF
EHDIHYYLRISTIPISLGIESSSIRITTQHFNHSQVKSEHQSYNVLQNRMYQSEGLFLFTGPTGSGKTTLMYELMYALKR
EKNKHIITIEDPVEQTLNGIVQVSVNEKANITYQQSFKAILRCDPDVIMIGEIRDDITAKQVIQASLSGHLVLSTMHASD
TIGAIHRLVELGVTVEQIKQGISCITNQRLVKKCDEARTLDMSYIFKDDIIKYMENDYET
Nucleotide
Download Length: 903 bp
>NTDB_id=803775 P3U46_RS06740 WP_323707842.1 1328445..1329347(+) (comGA) [Mammaliicoccus sciuri strain Dog029_2]
ATGGAGAAATTATTTAAGTCAATTATTAACGATGCTGTCAATTCTAATGCGAGTGATATTCATTTTGTACCTTTAAACGA
TGATAAAGTCTTTGTCCAAATGAGGATAAATGGCGATAATATACCTTATGATTTAGATTTAGACTTTAATTTGTATAGTA
GGCTACTTATTTATATGAAATTTATCGCTCATCTAGATGTAAGTGAACGAAATAAAGCACAAAGTGGTCAATATTTATTT
GAACATGACATACATTACTATTTAAGAATTTCCACGATACCTATCAGTTTAGGGATAGAATCTAGTTCCATTAGAATAAC
CACTCAACATTTTAATCATTCACAAGTGAAATCAGAGCATCAATCATATAACGTTCTACAAAACAGAATGTATCAATCAG
AAGGGCTATTTTTATTTACGGGTCCAACTGGATCAGGTAAGACTACATTAATGTATGAACTTATGTACGCATTAAAGAGA
GAGAAGAATAAACATATTATTACGATTGAAGACCCTGTAGAACAAACGTTAAATGGCATCGTTCAAGTTTCAGTCAATGA
AAAAGCTAACATAACTTATCAACAATCCTTTAAAGCCATTTTAAGATGTGATCCGGACGTTATTATGATTGGAGAGATAA
GAGATGATATTACTGCTAAGCAAGTTATTCAAGCTAGTTTAAGTGGTCATTTAGTACTTTCAACAATGCATGCGAGTGAT
ACAATCGGGGCAATCCACCGACTAGTTGAGCTAGGTGTAACAGTCGAACAAATTAAACAAGGTATTTCATGTATTACGAA
CCAACGTCTTGTGAAGAAATGTGATGAAGCAAGAACATTAGATATGTCCTATATTTTTAAAGATGACATTATTAAATATA
TGGAGAATGATTATGAAACGTAA
ATGGAGAAATTATTTAAGTCAATTATTAACGATGCTGTCAATTCTAATGCGAGTGATATTCATTTTGTACCTTTAAACGA
TGATAAAGTCTTTGTCCAAATGAGGATAAATGGCGATAATATACCTTATGATTTAGATTTAGACTTTAATTTGTATAGTA
GGCTACTTATTTATATGAAATTTATCGCTCATCTAGATGTAAGTGAACGAAATAAAGCACAAAGTGGTCAATATTTATTT
GAACATGACATACATTACTATTTAAGAATTTCCACGATACCTATCAGTTTAGGGATAGAATCTAGTTCCATTAGAATAAC
CACTCAACATTTTAATCATTCACAAGTGAAATCAGAGCATCAATCATATAACGTTCTACAAAACAGAATGTATCAATCAG
AAGGGCTATTTTTATTTACGGGTCCAACTGGATCAGGTAAGACTACATTAATGTATGAACTTATGTACGCATTAAAGAGA
GAGAAGAATAAACATATTATTACGATTGAAGACCCTGTAGAACAAACGTTAAATGGCATCGTTCAAGTTTCAGTCAATGA
AAAAGCTAACATAACTTATCAACAATCCTTTAAAGCCATTTTAAGATGTGATCCGGACGTTATTATGATTGGAGAGATAA
GAGATGATATTACTGCTAAGCAAGTTATTCAAGCTAGTTTAAGTGGTCATTTAGTACTTTCAACAATGCATGCGAGTGAT
ACAATCGGGGCAATCCACCGACTAGTTGAGCTAGGTGTAACAGTCGAACAAATTAAACAAGGTATTTCATGTATTACGAA
CCAACGTCTTGTGAAGAAATGTGATGAAGCAAGAACATTAGATATGTCCTATATTTTTAAAGATGACATTATTAAATATA
TGGAGAATGATTATGAAACGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGA | Staphylococcus aureus MW2 |
51.786 |
93.333 |
0.483 |
| comGA | Staphylococcus aureus N315 |
51.786 |
93.333 |
0.483 |
| comGA | Bacillus subtilis subsp. subtilis str. 168 |
40.217 |
92 |
0.37 |
| pilB | Haemophilus influenzae Rd KW20 |
34.713 |
100 |
0.363 |