Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   RJW55_RS00805 Genome accession   NZ_CP134473
Coordinates   134238..134645 (+) Length   135 a.a.
NCBI ID   WP_043026801.1    Uniprot ID   -
Organism   Streptococcus suis strain TMW_SS028     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 129238..139645
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJW55_RS00780 (RJW55_00780) - 130535..130894 (+) 360 WP_043026811.1 DUF1033 family protein -
  RJW55_RS00785 (RJW55_00785) - 131039..131989 (-) 951 WP_043026809.1 S66 peptidase family protein -
  RJW55_RS00790 (RJW55_00790) comGA 132075..133025 (+) 951 WP_043026808.1 competence type IV pilus ATPase ComGA Machinery gene
  RJW55_RS00795 (RJW55_00795) comGB 132937..133974 (+) 1038 WP_043026806.1 competence type IV pilus assembly protein ComGB Machinery gene
  RJW55_RS00800 (RJW55_00800) comGC 133976..134257 (+) 282 WP_043026803.1 competence type IV pilus major pilin ComGC Machinery gene
  RJW55_RS00805 (RJW55_00805) comGD 134238..134645 (+) 408 WP_043026801.1 competence type IV pilus minor pilin ComGD Machinery gene
  RJW55_RS00810 (RJW55_00810) comGE 134617..134910 (+) 294 WP_043026799.1 competence type IV pilus minor pilin ComGE Machinery gene
  RJW55_RS00815 (RJW55_00815) comGF/cglF 134897..135331 (+) 435 WP_043026797.1 competence type IV pilus minor pilin ComGF Machinery gene
  RJW55_RS00820 (RJW55_00820) comGG 135309..135836 (+) 528 WP_043026795.1 competence type IV pilus minor pilin ComGG -
  RJW55_RS00825 (RJW55_00825) comGH 135893..136846 (+) 954 WP_043026794.1 class I SAM-dependent methyltransferase Machinery gene
  RJW55_RS00830 (RJW55_00830) - 136897..138084 (+) 1188 WP_043026792.1 acetate kinase -
  RJW55_RS00835 (RJW55_00835) - 138399..138950 (+) 552 WP_043026790.1 folate family ECF transporter S component -

Sequence

Protein


Download         Length: 135 a.a.        Molecular weight: 15313.54 Da        Isoelectric Point: 9.2964

>NTDB_id=803775 RJW55_RS00805 WP_043026801.1 134238..134645(+) (comGD) [Streptococcus suis strain TMW_SS028]
MLRRKNKAFTLFESLLTLLVVSFLAISLSGTVQTVFRSVQEEIFLWEFEAIYKDSQKLAASSHQKVNLAIGGQEVTNGYQ
AVEVPGNVEVLEEKNIKFEENGGNSSLTKIRFRLSQKIVTYQLYIGSGRYKKTEE

Nucleotide


Download         Length: 408 bp        

>NTDB_id=803775 RJW55_RS00805 WP_043026801.1 134238..134645(+) (comGD) [Streptococcus suis strain TMW_SS028]
ATGCTAAGGCGAAAAAATAAGGCTTTTACTCTATTTGAAAGCCTGCTGACCTTGTTGGTTGTCAGTTTTCTGGCAATCAG
CCTGTCGGGAACAGTACAAACGGTCTTTCGGTCTGTTCAGGAAGAAATTTTTCTCTGGGAATTTGAAGCCATTTACAAAG
ATAGTCAGAAATTGGCAGCCAGTTCCCATCAAAAAGTGAACCTTGCTATCGGTGGACAGGAGGTTACAAATGGTTATCAG
GCTGTAGAGGTACCTGGAAATGTAGAGGTCTTGGAGGAGAAAAATATCAAATTTGAAGAAAATGGAGGAAATTCTTCCCT
GACCAAAATTCGTTTTCGGCTTAGTCAAAAAATAGTCACGTATCAATTATATATAGGGAGTGGTCGCTATAAGAAAACAG
AAGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Streptococcus gordonii str. Challis substr. CH1

48.031

94.074

0.452
  comGD Streptococcus mutans UA140

46.512

95.556

0.444
  comGD Streptococcus mutans UA159

46.512

95.556

0.444
  comGD/cglD Streptococcus pneumoniae TIGR4

45.736

95.556

0.437
  comGD/cglD Streptococcus pneumoniae R6

45.736

95.556

0.437
  comGD/cglD Streptococcus pneumoniae Rx1

45.736

95.556

0.437
  comGD/cglD Streptococcus pneumoniae D39

45.736

95.556

0.437
  comGD/cglD Streptococcus mitis NCTC 12261

44.961

95.556

0.43
  comGD/cglD Streptococcus mitis SK321

44.186

95.556

0.422
  comGD Lactococcus lactis subsp. cremoris KW2

39.844

94.815

0.378