Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   P3T86_RS09920 Genome accession   NZ_CP120099
Coordinates   2068273..2068713 (-) Length   146 a.a.
NCBI ID   WP_323702049.1    Uniprot ID   -
Organism   Staphylococcus nepalensis strain Dog109     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2063273..2073713
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P3T86_RS09870 (P3T86_09870) - 2063861..2064166 (-) 306 WP_323702043.1 DUF1140 family protein -
  P3T86_RS09875 (P3T86_09875) - 2064167..2064697 (-) 531 WP_323702044.1 DUF3310 domain-containing protein -
  P3T86_RS09880 (P3T86_09880) - 2064698..2065048 (-) 351 WP_323702045.1 SA1788 family PVL leukocidin-associated protein -
  P3T86_RS09885 (P3T86_09885) - 2065050..2065238 (-) 189 WP_207572571.1 hypothetical protein -
  P3T86_RS09890 (P3T86_09890) - 2065231..2065641 (-) 411 WP_323702046.1 RusA family crossover junction endodeoxyribonuclease -
  P3T86_RS09895 (P3T86_09895) - 2065652..2065870 (-) 219 WP_323702047.1 hypothetical protein -
  P3T86_RS09900 (P3T86_09900) - 2065871..2066032 (-) 162 WP_096810584.1 hypothetical protein -
  P3T86_RS09905 (P3T86_09905) - 2066026..2066799 (-) 774 WP_119487798.1 ATP-binding protein -
  P3T86_RS09910 (P3T86_09910) - 2066810..2067577 (-) 768 WP_096810586.1 DnaD domain protein -
  P3T86_RS09915 (P3T86_09915) - 2067564..2068244 (-) 681 WP_323702048.1 putative HNHc nuclease -
  P3T86_RS09920 (P3T86_09920) ssbA 2068273..2068713 (-) 441 WP_323702049.1 single-stranded DNA-binding protein Machinery gene
  P3T86_RS09925 (P3T86_09925) - 2068703..2069332 (-) 630 WP_323702052.1 DUF1071 domain-containing protein -
  P3T86_RS09930 (P3T86_09930) - 2069325..2069582 (-) 258 WP_323702054.1 DUF2483 family protein -
  P3T86_RS09935 (P3T86_09935) - 2069576..2069842 (-) 267 WP_323702057.1 DUF1108 family protein -
  P3T86_RS09940 (P3T86_09940) - 2069911..2070087 (-) 177 WP_323702060.1 hypothetical protein -
  P3T86_RS09945 (P3T86_09945) - 2070099..2070416 (-) 318 WP_323702062.1 DUF771 domain-containing protein -
  P3T86_RS09950 (P3T86_09950) - 2070395..2070895 (-) 501 WP_323702063.1 hypothetical protein -
  P3T86_RS09955 (P3T86_09955) - 2071008..2071202 (-) 195 WP_323702065.1 hypothetical protein -
  P3T86_RS09960 (P3T86_09960) - 2071413..2071712 (+) 300 WP_323702067.1 helix-turn-helix transcriptional regulator -
  P3T86_RS09965 (P3T86_09965) - 2071733..2072221 (+) 489 WP_323702069.1 ImmA/IrrE family metallo-endopeptidase -
  P3T86_RS09970 (P3T86_09970) - 2072345..2073016 (+) 672 WP_323702071.1 DUF4352 domain-containing protein -

Sequence

Protein


Download         Length: 146 a.a.        Molecular weight: 16351.09 Da        Isoelectric Point: 5.2482

>NTDB_id=802948 P3T86_RS09920 WP_323702049.1 2068273..2068713(-) (ssbA) [Staphylococcus nepalensis strain Dog109]
MINRVVLVGRLTKDPEFRTTPSGVNVANFTLAVNRTFTNAQGEREADFINVVVFKKQAENVNNYLFKGSLAGVDGRIQSR
SYENKEGQRIFVTEVAADSVQFLEPKGNNNQQNVSRGQQISTNDRQARNENPFVNSVDVDPDDLPF

Nucleotide


Download         Length: 441 bp        

>NTDB_id=802948 P3T86_RS09920 WP_323702049.1 2068273..2068713(-) (ssbA) [Staphylococcus nepalensis strain Dog109]
ATGATAAATAGAGTAGTGTTAGTTGGTCGTTTAACTAAAGACCCAGAGTTCAGAACAACACCATCTGGAGTGAATGTGGC
GAATTTTACCTTAGCTGTTAACAGAACGTTTACAAATGCTCAAGGAGAACGTGAAGCAGACTTTATCAATGTAGTTGTTT
TTAAAAAACAAGCAGAAAATGTAAACAATTACTTATTCAAAGGCAGTTTAGCTGGTGTTGATGGCCGTATACAGTCACGT
AGTTATGAAAATAAAGAAGGTCAACGCATATTTGTAACAGAAGTAGCAGCAGATAGTGTTCAATTTTTAGAACCAAAAGG
AAACAACAATCAACAAAATGTTTCAAGAGGACAACAGATTAGCACAAATGACCGACAAGCAAGAAATGAAAATCCATTTG
TAAACAGTGTAGATGTGGACCCGGACGATTTGCCATTTTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

56.18

100

0.685
  ssb Latilactobacillus sakei subsp. sakei 23K

47.977

100

0.568
  ssbB Bacillus subtilis subsp. subtilis str. 168

60.377

72.603

0.438
  ssbA Streptococcus mutans UA159

41.096

100

0.411
  ssbB Streptococcus sobrinus strain NIDR 6715-7

51.402

73.288

0.377