Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   P3U29_RS11400 Genome accession   NZ_CP120073
Coordinates   2312309..2312557 (-) Length   82 a.a.
NCBI ID   WP_047502888.1    Uniprot ID   -
Organism   Staphylococcus saprophyticus strain Dog122     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2307309..2317557
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P3U29_RS11385 (P3U29_11380) - 2308901..2309965 (+) 1065 WP_011303810.1 alcohol dehydrogenase catalytic domain-containing protein -
  P3U29_RS11390 (P3U29_11385) - 2309992..2311233 (+) 1242 WP_011303811.1 MFS transporter -
  P3U29_RS11395 (P3U29_11390) - 2311273..2312055 (+) 783 WP_011303812.1 DeoR/GlpR family DNA-binding transcription regulator -
  P3U29_RS11400 (P3U29_11395) rcrQ 2312309..2312557 (-) 249 WP_047502888.1 hypothetical protein Regulator
  P3U29_RS11405 (P3U29_11400) - 2312776..2313627 (-) 852 WP_232160553.1 sugar kinase -
  P3U29_RS11410 (P3U29_11405) eda 2313631..2314247 (-) 617 Protein_2224 bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase -
  P3U29_RS11415 (P3U29_11410) - 2314385..2315329 (+) 945 WP_011303815.1 LacI family DNA-binding transcriptional regulator -
  P3U29_RS11420 (P3U29_11415) cidR 2316176..2317051 (-) 876 WP_002484126.1 cidABC operon transcriptional activator CidR -

Sequence

Protein


Download         Length: 82 a.a.        Molecular weight: 9527.83 Da        Isoelectric Point: 6.0673

>NTDB_id=802555 P3U29_RS11400 WP_047502888.1 2312309..2312557(-) (rcrQ) [Staphylococcus saprophyticus strain Dog122]
MFSTSALDIETENKIQKAFKKLSEHRTSLIIAHRLSTIKDVDRIIFIKDGQILEEGSHDVLMQHDGQYKQLYLSQFSDVE
TF

Nucleotide


Download         Length: 249 bp        

>NTDB_id=802555 P3U29_RS11400 WP_047502888.1 2312309..2312557(-) (rcrQ) [Staphylococcus saprophyticus strain Dog122]
TTGTTTTCGACGAGTGCGCTAGATATTGAAACAGAAAATAAAATTCAAAAAGCGTTTAAAAAACTTTCAGAACACAGAAC
GTCTTTAATTATTGCACATCGATTATCGACGATTAAAGATGTCGACCGTATTATCTTTATTAAAGATGGTCAAATTTTAG
AAGAAGGAAGTCATGATGTATTAATGCAGCATGATGGTCAATATAAACAACTATACTTATCTCAATTCTCAGATGTTGAA
ACGTTTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

52.632

92.683

0.488