Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvB   Type   Machinery gene
Locus tag   RI061_RS03280 Genome accession   NZ_CP134070
Coordinates   703313..704335 (-) Length   340 a.a.
NCBI ID   WP_013447087.1    Uniprot ID   E4TCR5
Organism   Riemerella anatipestifer strain SX-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 698313..709335
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RI061_RS03255 (RI061_03255) - 698592..699002 (+) 411 WP_004916514.1 VanZ family protein -
  RI061_RS03260 (RI061_03260) uvrC 698992..700782 (-) 1791 WP_015345294.1 excinuclease ABC subunit UvrC Machinery gene
  RI061_RS03265 (RI061_03265) - 700802..701791 (-) 990 WP_004916518.1 cation diffusion facilitator family transporter -
  RI061_RS03270 (RI061_03270) coaE 701804..702394 (-) 591 WP_013447085.1 dephospho-CoA kinase -
  RI061_RS03275 (RI061_03275) - 702410..703276 (-) 867 WP_013447086.1 MBL fold metallo-hydrolase -
  RI061_RS03280 (RI061_03280) ruvB 703313..704335 (-) 1023 WP_013447087.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  RI061_RS03285 (RI061_03285) - 704499..705005 (-) 507 WP_004916526.1 ferritin -
  RI061_RS03290 (RI061_03290) - 705084..705596 (-) 513 WP_004916529.1 NUDIX domain-containing protein -
  RI061_RS03295 (RI061_03295) xerD 705601..706512 (-) 912 WP_013447089.1 site-specific tyrosine recombinase XerD -
  RI061_RS03300 (RI061_03300) - 706513..706944 (-) 432 WP_013447090.1 dCMP deaminase family protein -
  RI061_RS03305 (RI061_03305) - 706970..707734 (-) 765 WP_004916537.1 enoyl-CoA hydratase/isomerase family protein -
  RI061_RS03310 (RI061_03310) - 707747..708898 (-) 1152 WP_004916539.1 aldo/keto reductase -

Sequence

Protein


Download         Length: 340 a.a.        Molecular weight: 38073.77 Da        Isoelectric Point: 5.1930

>NTDB_id=802330 RI061_RS03280 WP_013447087.1 703313..704335(-) (ruvB) [Riemerella anatipestifer strain SX-1]
MPDFLHPDKENYSAEELLLEEQIRPQSFKDFAGQRRTLDNLEVFVAAAKKRGSALDHTLLHGPPGLGKTTLAHIIANELG
VGFKVTSGPVLDKPGSLAGLLTNLEENDVLFIDEIHRLSPVVEEYLYSAMEDYKIDIMLETGPNARSVQINLNPFTLVGA
TTRSGMLTKPMLARFGIQSRLEYYTVELLGMIIERSARVLGIPIYEDAALEIARRSRGTPRIANALLRRVRDFAEIKGNG
EIEIKITKFALDSLNVDEFGLDDMDNKIMRVMIENFKGKPVGISALATSIGENPETLEEVYEPFLIQEGFIIRTPRGREV
TDKAYKHLNINRTKNMGELF

Nucleotide


Download         Length: 1023 bp        

>NTDB_id=802330 RI061_RS03280 WP_013447087.1 703313..704335(-) (ruvB) [Riemerella anatipestifer strain SX-1]
ATGCCAGACTTCTTACATCCAGATAAAGAAAATTATTCAGCCGAAGAGCTTTTATTAGAAGAGCAAATACGCCCTCAATC
ATTCAAAGATTTTGCGGGGCAAAGGCGTACTTTGGATAATTTAGAAGTCTTTGTAGCAGCTGCCAAAAAACGAGGTTCTG
CACTAGACCACACACTTTTGCATGGTCCTCCAGGGTTAGGGAAAACCACTCTAGCCCACATTATTGCTAATGAATTGGGC
GTAGGTTTTAAAGTAACTTCTGGTCCCGTTTTAGACAAACCTGGAAGTTTGGCTGGACTCCTTACCAATTTAGAAGAAAA
CGATGTTCTTTTCATAGACGAAATACACCGTTTATCTCCCGTAGTAGAAGAATACCTTTATTCCGCTATGGAAGATTACA
AGATAGATATTATGCTGGAAACAGGACCTAATGCCCGTTCAGTACAAATCAATCTTAATCCGTTTACTTTAGTTGGAGCC
ACTACAAGAAGTGGTATGCTTACCAAACCAATGCTAGCAAGGTTTGGGATACAATCTAGGTTAGAGTACTACACGGTAGA
ACTTTTAGGTATGATTATCGAAAGAAGTGCTAGAGTGCTTGGCATTCCTATTTATGAAGATGCCGCACTAGAGATAGCTA
GAAGAAGCCGAGGTACTCCTAGAATTGCTAACGCTCTACTTCGCCGTGTGCGAGATTTTGCGGAAATAAAAGGCAATGGC
GAGATAGAAATAAAGATAACCAAATTCGCACTAGATTCTCTCAATGTAGATGAGTTTGGGCTTGATGATATGGACAACAA
AATCATGAGAGTGATGATAGAAAACTTCAAAGGGAAACCTGTGGGAATTTCTGCATTAGCCACTTCCATCGGAGAAAATC
CAGAAACTTTGGAAGAAGTTTATGAGCCTTTTTTAATTCAAGAAGGATTTATCATCAGAACGCCAAGAGGTCGAGAAGTT
ACCGATAAGGCTTATAAACACCTTAACATCAATAGAACTAAAAATATGGGAGAACTTTTCTAA

Domains

Predicted by InterProScan.

RuvB C-terminal winged helix domain (WHD_RuvB)

(258-329)

RuvB AAA lid domain (AAA_lid_4)

(184-257)

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(23-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB E4TCR5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvB Streptococcus pneumoniae TIGR4

57.143

92.647

0.529
  ruvB Streptococcus pneumoniae R6

57.143

92.647

0.529
  ruvB Streptococcus pneumoniae D39

57.143

92.647

0.529
  ruvB Bacillus subtilis subsp. subtilis str. 168

56.19

92.647

0.521
  ruvB Synechocystis sp. PCC 6803

47.147

97.941

0.462
  ruvB Helicobacter pylori 26695

47.937

92.647

0.444