Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrC   Type   Machinery gene
Locus tag   RI061_RS03260 Genome accession   NZ_CP134070
Coordinates   698992..700782 (-) Length   596 a.a.
NCBI ID   WP_015345294.1    Uniprot ID   -
Organism   Riemerella anatipestifer strain SX-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 693992..705782
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RI061_RS03245 (RI061_03245) - 695859..696857 (-) 999 WP_004916511.1 aminoglycoside phosphotransferase family protein -
  RI061_RS03250 (RI061_03250) lnt 696891..698534 (-) 1644 WP_004916512.1 apolipoprotein N-acyltransferase -
  RI061_RS03255 (RI061_03255) - 698592..699002 (+) 411 WP_004916514.1 VanZ family protein -
  RI061_RS03260 (RI061_03260) uvrC 698992..700782 (-) 1791 WP_015345294.1 excinuclease ABC subunit UvrC Machinery gene
  RI061_RS03265 (RI061_03265) - 700802..701791 (-) 990 WP_004916518.1 cation diffusion facilitator family transporter -
  RI061_RS03270 (RI061_03270) coaE 701804..702394 (-) 591 WP_013447085.1 dephospho-CoA kinase -
  RI061_RS03275 (RI061_03275) - 702410..703276 (-) 867 WP_013447086.1 MBL fold metallo-hydrolase -
  RI061_RS03280 (RI061_03280) ruvB 703313..704335 (-) 1023 WP_013447087.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  RI061_RS03285 (RI061_03285) - 704499..705005 (-) 507 WP_004916526.1 ferritin -
  RI061_RS03290 (RI061_03290) - 705084..705596 (-) 513 WP_004916529.1 NUDIX domain-containing protein -

Sequence

Protein


Download         Length: 596 a.a.        Molecular weight: 69188.93 Da        Isoelectric Point: 9.0407

>NTDB_id=802329 RI061_RS03260 WP_015345294.1 698992..700782(-) (uvrC) [Riemerella anatipestifer strain SX-1]
MNETLELQLKTLPKEPGVYRYYDEAGQLLYVGKAKNLRNRVLSYFNKSQVGYKTKIMVKKIHRLEITIVPSEYDALLLEN
NLIKEHQPFYNIMMKDDKSFPWLCIKNEPFPRLFLTRKRIKDGSEYYGPYAKVKPARVLLETIKNLYKIRTCTLNLSEDR
IEKANYKVCLEYHIKNCEGPCEGLESEEDYEKKINAVRGIIKGDFRLAKAYLEEEMLKHASNLEFEKAQMVKEKLEFLED
YQVKHTVVNPSIDDVDVFGMVSDETAAYINYFKIRNGNIVQSYTSEFRKKLEESDEEILEEAVVAIRDKFQSESKEILLP
FHLGTEIPQVKLIVPKVGDKKRIVELSEKNAREYRLEKLKQIQIVDPDRHTNRIMAEMKTLLRLPEEPRHIEGFDNSNIQ
GTNPVSACVVFKDGKPSKKDYRIFHIKTVEGPNDFASMEEVIYRRYKRYLDEGESLPQLILIDGGKGQLSSAVKSLKKLD
LYGKISIIGIAKRLEELFFPNDPIPLYLDKTSETLKVLQRVRDEAHRFGVKHHRTRRTNSTIKSELEEIPGVGAKSIELL
LSKLKSVKRIKEASQETLEEILGKSKGSIVWQYFNG

Nucleotide


Download         Length: 1791 bp        

>NTDB_id=802329 RI061_RS03260 WP_015345294.1 698992..700782(-) (uvrC) [Riemerella anatipestifer strain SX-1]
GTGAATGAAACTTTAGAACTTCAGCTAAAAACTTTACCAAAAGAGCCTGGCGTTTACCGTTATTATGACGAAGCGGGGCA
ACTGCTCTATGTAGGGAAAGCCAAAAACCTTAGAAATAGGGTGCTATCTTACTTCAATAAAAGTCAAGTGGGTTATAAGA
CCAAAATTATGGTTAAAAAAATCCATCGCTTGGAGATTACCATAGTTCCTAGTGAATACGACGCCCTCCTTTTAGAAAAC
AACCTCATTAAGGAACATCAGCCTTTCTACAATATTATGATGAAAGACGACAAAAGTTTCCCTTGGCTGTGCATCAAAAA
TGAACCTTTCCCTAGGCTATTTCTTACCAGAAAACGCATTAAAGATGGCTCCGAATATTATGGTCCTTACGCTAAAGTAA
AACCCGCTAGAGTACTTTTAGAAACCATTAAAAACCTCTATAAAATCAGGACTTGTACACTTAATCTTTCTGAAGATAGG
ATAGAGAAAGCCAATTATAAAGTCTGTTTAGAATACCACATTAAAAACTGCGAAGGTCCTTGCGAAGGTCTGGAAAGTGA
GGAAGATTACGAAAAGAAAATCAATGCTGTAAGAGGAATTATAAAAGGAGATTTCCGTTTGGCAAAAGCCTACTTAGAAG
AGGAGATGCTAAAACACGCCTCCAACCTAGAGTTTGAAAAAGCTCAAATGGTAAAGGAAAAATTGGAGTTTTTGGAAGAT
TATCAGGTTAAACACACTGTGGTTAATCCTAGTATAGATGATGTAGATGTATTTGGTATGGTGAGTGATGAAACGGCGGC
TTACATCAATTATTTTAAAATCAGAAATGGAAATATCGTTCAAAGTTATACTTCCGAATTCAGAAAAAAACTAGAAGAAA
GCGACGAAGAAATACTAGAAGAAGCTGTAGTTGCAATTAGAGATAAATTTCAGTCTGAATCTAAGGAAATATTACTACCA
TTCCATTTAGGCACCGAAATTCCTCAAGTGAAACTCATCGTTCCAAAGGTGGGCGACAAAAAGAGAATTGTAGAACTTTC
CGAAAAAAATGCGAGAGAATATCGTCTAGAAAAACTAAAGCAAATCCAAATTGTAGACCCTGACCGCCATACCAACCGCA
TTATGGCAGAAATGAAAACACTTCTTAGGCTTCCAGAAGAGCCAAGACACATTGAAGGCTTTGATAATTCTAATATTCAG
GGGACTAACCCTGTATCTGCCTGTGTCGTCTTTAAAGACGGTAAACCAAGCAAGAAGGATTATCGTATTTTCCATATCAA
GACCGTAGAAGGTCCTAACGACTTTGCTTCTATGGAAGAAGTGATTTACCGAAGATATAAAAGATATTTAGATGAAGGCG
AGTCTCTACCTCAACTGATTTTGATAGACGGCGGTAAGGGGCAGCTAAGCTCTGCCGTTAAAAGTTTAAAAAAGTTAGAT
TTATATGGTAAAATCTCCATCATAGGTATTGCCAAAAGGTTGGAAGAGCTATTTTTCCCTAACGACCCTATTCCTTTATA
TTTAGACAAAACTTCAGAAACACTTAAGGTCTTACAAAGAGTGAGAGACGAAGCCCACCGTTTTGGAGTAAAGCACCACC
GTACTAGAAGAACCAACAGCACCATAAAATCAGAACTAGAAGAAATCCCAGGTGTTGGTGCTAAATCCATAGAGCTATTG
CTAAGTAAACTAAAATCAGTAAAGCGTATTAAAGAAGCCTCACAGGAAACTTTAGAGGAAATTTTGGGCAAGTCTAAAGG
CAGTATAGTATGGCAGTATTTTAATGGATAG

Domains

Predicted by InterProScan.

UvrC RNAse H endonuclease domain (UvrC_RNaseH_dom)

(380-530)

GIY-YIG catalytic domain (GIY-YIG)

(16-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrC Streptococcus pneumoniae R6

37.627

98.993

0.372
  uvrC Streptococcus pneumoniae D39

37.627

98.993

0.372
  uvrC Streptococcus pneumoniae TIGR4

37.458

98.993

0.371